Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0369
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    35   0.055
SB_59040| Best HMM Match : Pox_A32 (HMM E-Value=1.6)                   28   8.3  
SB_34459| Best HMM Match : CagY_M (HMM E-Value=3.3)                    28   8.3  

>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
 Frame = -2

Query: 209 HLIIK*V*QSLYTRNLVTLCAISFKHVESRNIS--YITKSNTTTVTSL*EQCFN 54
           H+I K V ++  T+ LVT C ++ KHV   N+S   +T+ + TT  +L ++ F+
Sbjct: 229 HVICKHVTRTNVTKTLVTRCHVTSKHVTRTNVSKTLVTRCHVTTRVTLDKRLFS 282


>SB_59040| Best HMM Match : Pox_A32 (HMM E-Value=1.6)
          Length = 386

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 376 YGKSISNVRKSEIFKALNLKQKKEMNSCRTHSW 474
           YG  +S  R  E  KAL  K+  E+  C  H +
Sbjct: 287 YGTELSEKRMKEYMKALKTKKFSELEFCLRHPY 319


>SB_34459| Best HMM Match : CagY_M (HMM E-Value=3.3)
          Length = 192

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 376 YGKSISNVRKSEIFKALNLKQKKEMNSCRTHSWLNYITGSKIFQTR 513
           YG  +S  R  E  KAL  K+  E+  C  H  L  +   ++ QTR
Sbjct: 8   YGAELSEERIKECIKALKTKKFSELEFCLRHPILALVERRQL-QTR 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,618,709
Number of Sequences: 59808
Number of extensions: 333141
Number of successful extensions: 785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)