Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0369
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78210.1 68414.m09114 hydrolase, alpha/beta fold family prote...    30   1.7  
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea...    29   2.2  

>At1g78210.1 68414.m09114 hydrolase, alpha/beta fold family protein
           low similarity to hydrolases from Rhodococcus sp. EtbD2
           GI:3273241, EtbD1 GI:3273239; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 314

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +1

Query: 370 FVYGKSISNVRKSEIFKALNLKQKKEMNSCRTHSWLNYITGSKIFQTRQATYLDKVHKV- 546
           F  G S +   +S+IF+A  L +  E  S +  S +    G  +     + Y D V KV 
Sbjct: 88  FFGGSSTTRPERSDIFQAQTLMRALEAQSVKKFSLVGLSYGGFVGYRMASMYADAVEKVV 147

Query: 547 --S*SVCHEQK*M 579
               +VC E+K M
Sbjct: 148 ICCAAVCVEEKDM 160


>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
           family protein contains contains Pfam PF00400: WD
           domain, G-beta repeat (7 copies, 3 weak);similar to gene
           PC326 protein - mouse, PIR2:S37694
          Length = 471

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 3   LKHFSLLTRVGKNLFTKVETLFLQASYCRCI 95
           +KHF L TRV  NLFT  E  F    Y   I
Sbjct: 169 VKHFDLRTRVATNLFTCKEAKFNLVVYLHAI 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,079,038
Number of Sequences: 28952
Number of extensions: 238012
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)