Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0367
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    30   0.30 
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    29   0.53 
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    27   2.1  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    27   2.8  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   3.7  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   6.5  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 498 YLPTLISHWNESVCEESIKLLVNRFLYYECSIIVPFC 608
           YLPT +S W   VC E  K  + +   ++ S+I P C
Sbjct: 146 YLPTTVSWW---VCYEESKKYLQKQSNWDISVIAPIC 179


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 658 LRLIKCIKFTKKFNFNLQNGTI 593
           LR ++CI+F  K++FN+   TI
Sbjct: 191 LRAVRCIRFATKYDFNIHEETI 212


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 226 LIP*IMSNIVHTRKYVWIGKSHFGKKNNVSH 134
           + P +M N+V  +  +WIGKS  G  + + H
Sbjct: 150 ITPALMGNLVPQQCNLWIGKSENGTSSGLHH 180


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 299 ARLQVLVSFRPKKSTTGFIILFYTTHSINNVKY 201
           AR+  ++     KST G  I+F+   S+ N  Y
Sbjct: 192 ARIPQIIKNHKAKSTEGLSIIFFVLASVGNTSY 224


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 616 FNLQNGTIILHS*YKNRFTKSLIDSSHTDS 527
           FN QNG +I HS  +N+   + I   H DS
Sbjct: 597 FNFQNGQVIEHSLRRNQLGVAPIILKHFDS 626


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 43  NFIYVIHGCRYRYNVESVHEH 105
           +F Y++H CR R++  S H H
Sbjct: 182 DFSYLVHPCRVRFSQWSKHLH 202


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 231 VKKNDKACSAFFRSKAYKHLKPGR-FLTRVGTSKT*NRIS*ISACYIAKICI*LQYFISY 407
           +KK DK   +  R    K +     FL   G  KT ++   I A + AK+C     F++ 
Sbjct: 277 LKKYDKTLGSSLRESYMKRVNQAYPFLPATG--KTLSKRLNIVAEWYAKLCCQGDTFVAI 334

Query: 408 KQLRGDFK 431
           ++LRG  +
Sbjct: 335 RRLRGHLR 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,359
Number of Sequences: 5004
Number of extensions: 56157
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)