Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0367
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14102| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0024)          30   1.7  
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)                   29   5.3  

>SB_14102| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0024)
          Length = 515

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 435 CSIARKKNICLVSKRISQTLTY----LPTLISHWNESVCEE 545
           C + RK   C V K++ + L      +P +IS+W+ + C E
Sbjct: 128 CPVRRKYRRCRVGKKVKERLNSKVYKIPVVISNWSRNGCHE 168


>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
          Length = 731

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 435 CSIARKKNICLVSKRISQTLTY----LPTLISHWNESVCEE 545
           C + RK   C   K++ + L      +P +IS+W+ + C E
Sbjct: 112 CPVRRKYRRCRAGKKVKERLNSKVYKIPVVISNWSRNGCHE 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,579
Number of Sequences: 59808
Number of extensions: 367868
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)