Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0367
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-14|CAA97415.1|  297|Caenorhabditis elegans Hypothetical p...    31   1.1  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    29   2.6  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    29   2.6  
AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    28   6.1  
Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical p...    28   8.0  
AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical ...    28   8.0  
AF039045-12|ABJ99097.1|  272|Caenorhabditis elegans Serpentine r...    28   8.0  

>Z73102-14|CAA97415.1|  297|Caenorhabditis elegans Hypothetical
           protein B0035.13 protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 426 FKSCSIARKKNIC----LVSKRISQTLTYLPTLISHWNESVC 539
           FK CS + + N C    L++  +S  LTY    +S W E+ C
Sbjct: 255 FKVCSSSDESNDCSNGLLITASVSDHLTYFTKDVSQWGEAGC 296


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +3

Query: 402 SYKQLRGDFKSCSIARKKNICLVSKRISQTLTYLPTLISHWNESV-CEESIKLLVNRFLY 578
           +++QL  D ++C  +  + + ++++ +SQ+   L  LI+   E + CE S+KLL  RFL 
Sbjct: 697 AFQQLLEDEEACIQSVHRLMPVITRSLSQSA--LEDLINPMIELIQCETSVKLLDRRFLM 754

Query: 579 Y 581
           +
Sbjct: 755 H 755


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +3

Query: 402 SYKQLRGDFKSCSIARKKNICLVSKRISQTLTYLPTLISHWNESV-CEESIKLLVNRFLY 578
           +++QL  D ++C  +  + + ++++ +SQ+   L  LI+   E + CE S+KLL  RFL 
Sbjct: 697 AFQQLLEDEEACIQSVHRLMPVITRSLSQSA--LEDLINPMIELIQCETSVKLLDRRFLM 754

Query: 579 Y 581
           +
Sbjct: 755 H 755


>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +3

Query: 492 LTYLPTL---ISHWNESVCEESIKLLVNRF 572
           LTYLP+L   I +W++   E+++K +VN F
Sbjct: 145 LTYLPSLLFVIVYWSDVANEDALKRIVNSF 174


>Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 202 IVHTRKYVWIGKSHFGKKNNVSHC*PKSALSVSAHEHFPHYTYTYIH 62
           ++H    V  G   +  KN+   C P+  +S +A E F  Y +  +H
Sbjct: 105 LLHPLILVGRGAEKYAVKNDFPTCTPEELVSKAAKESFEKYLHRMLH 151


>AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 202 IVHTRKYVWIGKSHFGKKNNVSHC*PKSALSVSAHEHFPHYTYTYIH 62
           ++H    V  G   +  KN+   C P+  +S +A E F  Y +  +H
Sbjct: 105 LLHPLILVGRGAEKYAVKNDFPTCTPEELVSKAAKESFEKYLHRMLH 151


>AF039045-12|ABJ99097.1|  272|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 15 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 432 SCSIARKKNICLVSKRISQTL-TYLPTLISHWNESVCEESIKLLVNRFLYYECSIIVPFC 608
           S ++   ++I ++S    + + TY+P     ++E     SI L+   F  +E  ++  FC
Sbjct: 85  SSNLVTVRSIIVLSVSTERAVATYMPMFFYKYHEQSPRISIILIAVSFGMFESLVLFVFC 144

Query: 609 RLKLN 623
             +LN
Sbjct: 145 SFELN 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,185,884
Number of Sequences: 27780
Number of extensions: 305089
Number of successful extensions: 635
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)