Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0366
         (725 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0EIA0 Cluster: Chromosome undetermined scaffold_98, wh...    34   3.1  
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot...    34   4.1  

>UniRef50_A0EIA0 Cluster: Chromosome undetermined scaffold_98, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_98,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 664

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -2

Query: 406 LSLKQMVQIR*IIVSGPQFALFTSDLKSEKNLSELL-FILVHLYFQRYLLYLILDH 242
           LS  QM Q++   +S P+F + T  +  + +LS+LL F+L  LYF  ++L +I  H
Sbjct: 456 LSFNQMKQLQSSALSAPEFNI-TGLIHPQLHLSQLLTFLLQGLYFHGWMLQIITIH 510


>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
           Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
           symbiosum
          Length = 203

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -1

Query: 377 IDNCQRSAIRIIYIRFEIRKKFIRTFIHTGSS-IFSTISVVSHLGS*YPIKHIFIINQHL 201
           ID     +   I+ R+E  K+++R+ +  GSS +   + V +  G  + +K + +  +HL
Sbjct: 70  IDKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRLKVLALTYRHL 129

Query: 200 NRSILY*ISLSIRTI 156
           N S  + + L IR +
Sbjct: 130 NTSKKHALRLIIRDV 144


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,309,851
Number of Sequences: 1657284
Number of extensions: 9785818
Number of successful extensions: 17767
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17759
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)