Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0366
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   3.6  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   4.8  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   6.3  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   8.3  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = -1

Query: 398 ETNGTDSIDNCQRSAIRIIY-------IRFEIRKKFIRTFIHTGSSIFSTISVV 258
           E  G DS+D+ Q  A+ + Y       I+ EI +    TFI  G ++   + VV
Sbjct: 455 EKKGVDSLDDLQNVALMVHYLNNDDPQIQIEILRSLKDTFIKAGENVKYLLPVV 508


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 300 YSYWFIYIFNDICCISSW 247
           YSYW  Y++ ++  ++SW
Sbjct: 571 YSYWLYYMYANMTSLNSW 588


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 22  LNRICYQYSFYL*QCSV 72
           L+R+C Q  FYL QC+V
Sbjct: 152 LDRLCDQVKFYLDQCNV 168


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 284 SIFSTISVVSHLGS*YPIKHIFIINQHLNRSILY*ISLSIRTI 156
           S+F   S V + GS +PI  +  + ++++++ +Y   LS  TI
Sbjct: 213 SVFFGFSGVKYKGSDFPIDKLMFLIRNMSKANIYTTILSCITI 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,489
Number of Sequences: 5004
Number of extensions: 46947
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)