Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0365
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    28   0.95 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   5.1  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   6.7  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   6.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   6.7  

>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 7   PAEKL*HRLQDLATDQMEQTS*LPVPVSMIYK 102
           P  KL  RLQ  A   +++TS LPVP S  +K
Sbjct: 47  PFHKLWDRLQPKAQSTIQRTSSLPVPSSSNFK 78


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 280  SG*QFHTGKAMTMITNSSSVPVIFYLLTQQRLFVINSIMWNSKL 149
            +G  F T K + +  N      + +L   + LF+I S MW S L
Sbjct: 1111 AGRTFTTLKTLLLKDNDVEAQKLDHLFLAKLLFIIISQMWKSNL 1154


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 238 TNSSSVPVIFYLLTQQRLFVINSIMWNSKLELKTNTRLAIL 116
           T ++S+  IF+ LT   L  +NS+  N K+       LAI+
Sbjct: 139 TFTNSIETIFFFLTILFLSKLNSVPLNKKISYLYTFLLAIV 179


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 250 MTMITNSSSVPVIFYLLTQQRLFVINSIMWNSKLEL 143
           ++M+T  S   + F  L +    ++NS++WN KL L
Sbjct: 285 LSMLTGPSE-DITFSSLIKDIKKILNSLVWNIKLSL 319


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   NLLKSFDTGYRTLPQTKWSKHPDYPFQ 85
           N+ + FD+  R L   KW    D PFQ
Sbjct: 732 NMQEVFDSADRPLDGNKWWSKADDPFQ 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,101
Number of Sequences: 5004
Number of extensions: 39376
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)