Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0365
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26...    30   0.96 
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271...    29   2.9  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    28   3.9  
11_06_0703 + 26444128-26446215,26446525-26447226                       27   8.9  
06_03_0801 + 24714725-24715501                                         27   8.9  
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818...    27   8.9  

>02_01_0037 +
           261405-261779,261880-262065,262185-262271,262341-262420,
           262518-262599,262794-262814,263204-263249,263365-263483,
           263685-263798,263885-263959,264068-264157,264604-264713,
           264902-265160
          Length = 547

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 429 GRFINAAGTTG-FPTGKRAVSATQLM*VSSFIRHPRLYTLCFRLVCCVE 286
           G  I A G  G +P GK+ VSA QL    S++RH +   L  +LV  V+
Sbjct: 146 GHMITAVGGHGGYPGGKQFVSADQLRDKLSYLRHEK--ALIIKLVDIVD 192


>11_06_0713 +
           26524984-26525276,26526008-26526434,26526550-26527171,
           26528059-26528099,26528181-26528249,26528565-26528665,
           26529300-26529378,26529955-26530053,26530129-26530197,
           26530326-26530375,26530482-26530548,26531031-26531125,
           26534469-26534856
          Length = 799

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = -1

Query: 488 VSERGSGRAPNT------QTAXPRALADSLMQLARQVSRLESGQ*AQRN*CELVHSLGTP 327
           V ERG  R P T      +TA P+A A +    +R + R+       R+   ++HSLG  
Sbjct: 28  VPERGGARRPPTLPAQQRRTALPQAAAAA--PSSRLLQRVGRAGLPDRHYVRILHSLGQA 85

Query: 326 GFTLYASGSYVVWN 285
              +   G  + WN
Sbjct: 86  VHVISLDGKLMYWN 99


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 439 PARWPIH*CSWHDRFPDWKAG 377
           P +W +H   WH   P W++G
Sbjct: 900 PDQWGLHIVIWHGASPSWRSG 920


>11_06_0703 + 26444128-26446215,26446525-26447226
          Length = 929

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 13  EKL*HRLQDLATDQMEQTS*LPVPVSMIYKAFFFQESLNE 132
           EK  H L+D+  + + Q   LP+ + +I K    +E  N+
Sbjct: 343 EKQVHHLRDIGIEIVHQCGYLPLAIKIIAKVLISKEKTND 382


>06_03_0801 + 24714725-24715501
          Length = 258

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 406 ASCINESANARGXAVCVLGA 465
           A+C+ E A  RG  VC++GA
Sbjct: 91  AACVAEYARRRGRGVCLMGA 110


>03_02_0407 -
           8187956-8188099,8188203-8188371,8188456-8188625,
           8188737-8188915,8189014-8189079,8189171-8189344,
           8189593-8189891,8190136-8190236,8190328-8190412,
           8190527-8190680,8190781-8190986,8192403-8192647
          Length = 663

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 353 ELVHSLGTPGFTLYASGSYVVWNCERITISHRKSYDHDYEFELGTRDFLFINT 195
           E +   GTP FT+Y +G +    C R T  H  +     +  L  R+ + + T
Sbjct: 271 EELEEFGTPDFTIYNAGQF---PCNRYT--HYMTSSTSVDINLARREMVILGT 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,907
Number of Sequences: 37544
Number of extensions: 243370
Number of successful extensions: 533
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)