Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0365
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    30   0.85 
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...    29   2.6  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 226 SVPVIFYLLTQQRLFVINSIMWNSKLELKTNTRLAILEKKMLCI 95
           ++  +  LL   +LF+ N +  N + EL    RLA+++  ++C+
Sbjct: 185 TITFVCLLLLCAKLFIFNELGRNGRKELSRVNRLALIDSTIVCV 228


>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 223 VPVIFYLLTQQRLFVINSIMWNSKLELKTNTRLAILEKKM 104
           VP+++++L++  +    +++W  K EL  +T  A   KKM
Sbjct: 36  VPILYHILSKSTVSARPNVLWCYKKELSFSTHRAKKAKKM 75


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 215 HGYRARIRNHGHSFSCVKLLSAH 283
           H YR  +R HG+   C    SAH
Sbjct: 782 HDYRPGVRRHGNGSECSSCSSAH 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,190,244
Number of Sequences: 27780
Number of extensions: 224161
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)