Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0365
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65690.1 68418.m08266 phosphoenolpyruvate carboxykinase [ATP]...    30   0.80 
At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP]...    29   2.5  
At3g47450.2 68416.m05160 expressed protein                             28   4.3  
At3g47450.1 68416.m05159 expressed protein                             28   4.3  
At1g26390.1 68414.m03219 FAD-binding domain-containing protein s...    27   5.7  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    27   5.7  

>At5g65690.1 68418.m08266 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 670

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 353 ELVHSLGTPGFTLYASGSYVVWNCERITISHRKSYDHDYEFELGTRDFLFINT 195
           E + + GTP FT+Y +G +    C R T  H  +     +  LG R+ + + T
Sbjct: 278 EELENFGTPDFTIYNAGKF---PCNRFT--HYMTSSTSVDINLGRREMVILGT 325


>At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 671

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 353 ELVHSLGTPGFTLYASGSYVVWNCERITISHRKSYDHDYEFELGTRDFLFINT 195
           E + S GTP FT+Y +G +    C R T  H  +     +  L  R+ + + T
Sbjct: 279 EELESFGTPDFTIYNAGQF---PCNRYT--HYMTSSTSVDLNLARREMVILGT 326


>At3g47450.2 68416.m05160 expressed protein
          Length = 561

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 429 GRFINAAGTTG-FPTGKRAVSATQLM*VSSFIRHPRLYTLCFRLVCCVE 286
           G  I A G  G +P GK+ VSA +L    S +RH +   L  +LV  V+
Sbjct: 154 GHMITAVGGNGGYPGGKQFVSADELREKLSHLRHEK--ALIVKLVDIVD 200


>At3g47450.1 68416.m05159 expressed protein
          Length = 561

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 429 GRFINAAGTTG-FPTGKRAVSATQLM*VSSFIRHPRLYTLCFRLVCCVE 286
           G  I A G  G +P GK+ VSA +L    S +RH +   L  +LV  V+
Sbjct: 154 GHMITAVGGNGGYPGGKQFVSADELREKLSHLRHEK--ALIVKLVDIVD 200


>At1g26390.1 68414.m03219 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 530

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
 Frame = +2

Query: 188 TLLC**IKNHGYRARIRNHGHSFSCVKLLSA-----------HNSTQHTSRKHKV*SLGC 334
           T++C   K++G + RIR+ GH +  +  +S+            + T   S K      G 
Sbjct: 92  TVVC--AKSNGIQLRIRSGGHDYEGLSYMSSVPFVILDMYNLRSITVDVSSKKAWIQAGA 149

Query: 335 LMNEL-THINCVALTARFPVG 394
            + EL T++N V+ T  FP G
Sbjct: 150 TLGELYTNVNDVSQTLAFPAG 170


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
            protein contains proline-rich extensin domains,
            INTERPRO:IPR002965
          Length = 1696

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 382  LSSRETCRASCINESANARGXAVCVLGA-LPLPRSLTRCAR 501
            L S       C++  +++RG   C+L   + L + LT CAR
Sbjct: 885  LKSYHPAEIPCVDSGSDSRGLKTCLLEPNVSLSKDLTDCAR 925


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,437,513
Number of Sequences: 28952
Number of extensions: 199986
Number of successful extensions: 388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)