Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0364
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   3.3  
SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   5.7  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 GFEENLMRNWVCLVEHESSRDTSKTN 193
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 426 AAANIRQRALAVVLPTVPGIEAVTFVNFLSAFRCLSDV-VSQEVGALN 286
           A  N+++RAL +  P +  +  ++ V+ LS    LSDV V  +V  L+
Sbjct: 90  ALENVQRRALKIAFPVLSDVSVLSDVSVLSDVSVLSDVSVLSDVSVLS 137


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 109 ETWLRRKSHEELGMSGRAREQP*HIQDEHEP 201
           E WL RK H E  +S   RE+   ++++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,315,536
Number of Sequences: 59808
Number of extensions: 436738
Number of successful extensions: 896
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)