Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0362
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 47 2e-05
01_01_1152 + 9170628-9171899 45 8e-05
11_01_0771 + 6453130-6454488 44 2e-04
11_01_0767 + 6438648-6438809,6439146-6440000 38 0.007
11_02_0012 - 7346282-7347136,7347234-7347593 36 0.039
05_06_0044 - 25150322-25151260 36 0.051
11_01_0750 - 6315126-6315896,6316371-6316784 35 0.067
11_02_0011 - 7337618-7338496,7338596-7338991 35 0.089
11_02_0014 - 7352619-7352918,7353173-7353418 30 1.9
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 30 1.9
02_01_0423 - 3092863-3094959 29 5.8
12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320... 28 7.7
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 28 7.7
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/84 (27%), Positives = 46/84 (54%)
Frame = +2
Query: 509 DEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKP 688
D T G IK + I+ T + + N ++F+G W F+ S+TE+ +FH+ + +++ P
Sbjct: 474 DRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGESVQAP 533
Query: 689 TMRLLQSLFYTENEELGAKMIELP 760
M + + + + L K+++LP
Sbjct: 534 FMSTRKKQYLSSYDSL--KVLKLP 555
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/84 (26%), Positives = 47/84 (55%)
Frame = +2
Query: 509 DEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKP 688
++ T G IK + +D T + + N ++F+G W F+AS+T++ +FH+ + +++ P
Sbjct: 222 EKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKSVQAP 281
Query: 689 TMRLLQSLFYTENEELGAKMIELP 760
M + + + L K+++LP
Sbjct: 282 FMSTSKKQYILSYDNL--KVLKLP 303
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 187 KNVIASPLGVMLLLSLYESGAGASPRKRSGKSLG 288
+NV SPL + + LSL +GAG + R + +LG
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALG 68
>01_01_1152 + 9170628-9171899
Length = 423
Score = 44.8 bits (101), Expect = 8e-05
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 512 EQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPT 691
+ T+G I+ + + +D +T V + N + F+G W +PF+ S T FH+ + ++ P
Sbjct: 169 DATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPF 228
Query: 692 M 694
M
Sbjct: 229 M 229
>11_01_0771 + 6453130-6454488
Length = 452
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 557 IDPATAVAMFNVIFFQGHWHVPFNASETEEKDFH 658
+ P TAV + N I+F+G W PFN S+TE K F+
Sbjct: 198 VGPETAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/67 (23%), Positives = 37/67 (55%)
Frame = +2
Query: 587 NVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPTMRLLQSLFYTENEELGAKMIELP*R 766
N I+F+G W PF+ S+T E++F + ++++ P M+ ++ G +++ LP +
Sbjct: 93 NAIYFKGEWLAPFDKSDTAEREFRRLDGSSVEVPFMQRPSGSYHHVACHDGFRVLRLPYK 152
Query: 767 SQDSVWS 787
+ ++
Sbjct: 153 ATSDTYN 159
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 35.9 bits (79), Expect = 0.039
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +2
Query: 530 IKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPTMRLLQS 709
I+ + + + TA+ + N I+F+G W PF T FH + +++ P M +
Sbjct: 140 IREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSRED 199
Query: 710 LFYTENEELGAKMIELP 760
+ + G K+++LP
Sbjct: 200 QYIGFYD--GFKVLKLP 214
>05_06_0044 - 25150322-25151260
Length = 312
Score = 35.5 bits (78), Expect = 0.051
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 566 ATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPTM 694
+ +V + N ++F +W PF TEE DFHV ++ P M
Sbjct: 75 SASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 35.1 bits (77), Expect = 0.067
Identities = 18/83 (21%), Positives = 43/83 (51%)
Frame = +2
Query: 512 EQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPT 691
+ T+G + T + ID T + + + ++F+G W + T E+ F+ + T+++ P
Sbjct: 152 DSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPF 211
Query: 692 MRLLQSLFYTENEELGAKMIELP 760
+ ++ + ++ K+I+LP
Sbjct: 212 VEYDRTRLFAVHDNF--KVIKLP 232
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 34.7 bits (76), Expect = 0.089
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 569 TAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPTM 694
TA+ + N I+F+G W PF S T FH + +++ P M
Sbjct: 165 TALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFM 206
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 569 TAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPTMR 697
T + + N I+F+G W PF T FH + +++ MR
Sbjct: 115 TTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLDGSSVNVRFMR 157
>07_03_1696 -
28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 252 CQSKEEIREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANK 380
C KE+ E+ G + +E+S LN +Y + K+ VANK
Sbjct: 844 CPLKEQTSEVHGARKRKETSPADSGLNSQYGVTESKYELVANK 886
>02_01_0423 - 3092863-3094959
Length = 698
Score = 28.7 bits (61), Expect = 5.8
Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Frame = +3
Query: 540 LSAKTKLTPPRPLQCLTSFSSRGTGTFRSTQVXXXXXXXXXXXXRPSRNRQCVSYSLCFT 719
LS TP RPLQ L S+ TG F ST S NR F
Sbjct: 130 LSELPSSTPDRPLQVLNISSNLFTGNFPST---TWERMNNLVVLNASNNRFTGQMPTSFC 186
Query: 720 LKTKNWVQR**SYRK-GARIPYGRGSADKLT 809
++ SY + RIP G + KLT
Sbjct: 187 ASAPSFAVLELSYNQFSGRIPAGLSNCSKLT 217
>12_01_0404 +
3200787-3200898,3201016-3201091,3201442-3201544,
3202109-3202160,3202239-3202333,3202703-3202768,
3202910-3203419,3203598-3203756,3204022-3204321,
3204867-3205193,3205548-3205754,3205978-3206076,
3206193-3206251,3206294-3206639
Length = 836
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 761 TVTLSSLHPILRFQCKTKTVRDALSVS*WSFFH 663
T ++ L+ ILR CKTK D V W + +
Sbjct: 472 TTSIGQLNSILRQACKTKEKEDLRKVDNWQYIN 504
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 375 NKIYVSDQYKLADAFSRTANLFRSEVDNINFGDPKNAADIINRWATNRLKDT*RLLSAKT 554
+K+ ++ + ++ S N RSE + F DP AD +++ + RL++ + T
Sbjct: 680 SKVRPDEKEQDSEPLSTQNNCMRSESKSNCFSDPLKFADTLHQMSNLRLEEENN--TEPT 737
Query: 555 KLTPP-RPLQ 581
+LT P PLQ
Sbjct: 738 QLTSPLEPLQ 747
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,591,290
Number of Sequences: 37544
Number of extensions: 513332
Number of successful extensions: 1429
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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