Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0362
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      48   1e-05
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      41   0.001
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      40   0.002
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   7.9  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = +2

Query: 509 DEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKP 688
           +++T+  IK  + E   +  T + + N ++F+G W   FN + T+   F       I+  
Sbjct: 138 EQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQ 197

Query: 689 TMRLLQSLFYTENEELGAKMIELP*RSQD-SVWSWFCRQIDGL 814
            M       Y E+  LG +++ELP   +  S+      ++DGL
Sbjct: 198 FMYQSSEFRYLESSTLGCQIVELPYAGEKLSMVVLLPNEVDGL 240


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
 Frame = +2

Query: 512 EQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDE----KTTI 679
           +QT+G+IK  +    I+  T + + N ++F+G W   F    T    F V E    K  +
Sbjct: 107 QQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEV 166

Query: 680 KKPTMRLLQSLFYTENEELGAKMIELP*RSQDS 778
           +  T ++  + +Y  + ++  +++ELP    D+
Sbjct: 167 EMMTRKMKVNFYY--DADIKCRVVELPYSGDDT 197


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/84 (21%), Positives = 37/84 (44%)
 Frame = +2

Query: 509 DEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKP 688
           +E+T+  I   ++    +  T + + N I+F+G W  PF    +   +F       ++  
Sbjct: 101 EERTKKKICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVE 160

Query: 689 TMRLLQSLFYTENEELGAKMIELP 760
            M       Y  +++   K++ELP
Sbjct: 161 MMFQKSKFKYLHSDKYKCKLLELP 184


>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 181 DDKNVIASPLGVMLLLSLYESGAGASPRKRSGKSLGEGRLKSHHTHTD 324
           DD NV+   + +M+++S  +S   A+P +R  ++   G LKS  T T+
Sbjct: 329 DDDNVVVVAIMMMMMIS-NKSRCMATPSQRRLEARKRGALKSEGTRTE 375


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = +3

Query: 168  LQPS*RQECDSVSSRRDAAAFLVRVWSRCQSKEEIREILGGGEAQESSHTYGLLNQRYAE 347
            LQPS      S+ SR D A        R Q  EE RE+ G  EA +        N ++A 
Sbjct: 1051 LQPSSIDTTSSIISREDEAVKKDSARRRRQVVEETRELSGFIEALKRRDVSSRYNVKHAR 1110

Query: 348  F 350
            F
Sbjct: 1111 F 1111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,900,429
Number of Sequences: 59808
Number of extensions: 579046
Number of successful extensions: 2536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2536
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)