Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0362
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or cys... 41 0.001
AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin prote... 41 0.001
U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein... 40 0.002
AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or cys... 40 0.002
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 38 0.009
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 38 0.009
U23182-3|AAK70642.1| 252|Caenorhabditis elegans Hypothetical pr... 29 3.0
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 29 4.0
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 29 4.0
>AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/91 (28%), Positives = 43/91 (47%)
Frame = +2
Query: 512 EQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPT 691
E T+G I + D + A+ + N IFFQG W F E E +F + P
Sbjct: 141 ESTKGKIPDMIKPDNLKDVDAI-LINAIFFQGDWRRKF--GEPAESNFSISATENRLVPM 197
Query: 692 MRLLQSLFYTENEELGAKMIELP*RSQDSVW 784
+R + FY +++E ++I +P + + S W
Sbjct: 198 LRETRDYFYNKDDEW--QVIGIPFKDK-SAW 225
>AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin protein
1 protein.
Length = 366
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/91 (28%), Positives = 43/91 (47%)
Frame = +2
Query: 512 EQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKTTIKKPT 691
E T+G I + D + A+ + N IFFQG W F E E +F + P
Sbjct: 141 ESTKGKIPDMIKPDNLKDVDAI-LINAIFFQGDWRRKF--GEPAESNFSISATENRLVPM 197
Query: 692 MRLLQSLFYTENEELGAKMIELP*RSQDSVW 784
+R + FY +++E ++I +P + + S W
Sbjct: 198 LRETRDYFYNKDDEW--QVIGIPFKDK-SAW 225
>U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein 6
protein.
Length = 375
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 512 EQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKT 673
E T+GHIK ++ D I + N +F+ +W F T +++F E +
Sbjct: 144 ENTKGHIKKIINPDSISEELVAVLTNAFYFKANWQTKFKKESTYKREFFSSENS 197
>AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 375
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 512 EQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDFHVDEKT 673
E T+GHIK ++ D I + N +F+ +W F T +++F E +
Sbjct: 144 ENTKGHIKKIINPDSISEELVAVLTNAFYFKANWQTKFKKESTYKREFFSSENS 197
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 518 TQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDF--HVDEKTTIK 682
T G IK ++D I A A+ + N I+F+ W F+ E+DF H EK IK
Sbjct: 135 TNGKIKNIATQDSIKDAIAL-LINSIYFKADWDDKFDGMSVSEQDFTLHTGEKKKIK 190
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 518 TQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETEEKDF--HVDEKTTIK 682
T G IK ++D I A A+ + N I+F+ W F+ E+DF H EK IK
Sbjct: 135 TNGKIKNIATQDSIKDAIAL-LINSIYFKADWDDKFDGMSVSEQDFTLHTGEKKKIK 190
>U23182-3|AAK70642.1| 252|Caenorhabditis elegans Hypothetical
protein F40B5.3 protein.
Length = 252
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 532 YVSLSLFVAQRLMISAAFFGSPKLMLSTSLLNRFAVLENASANLYWS 392
YV+ S+ + A F SP+ +++T+L N L A+L+W+
Sbjct: 31 YVNKSVCPCENFYRHACSFDSPRNLMATALKNLTYELRQKQADLFWN 77
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 229 SLYESGAGASP-RKRSGKSLGEGRLKSHHTHTDY*ISVTQNS 351
+L+++ + A+P R+ SGK++ ++SHHT D S+T S
Sbjct: 706 ALFDAASLATPKREMSGKTINPVHIESHHTIGDIFRSITHLS 747
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 229 SLYESGAGASP-RKRSGKSLGEGRLKSHHTHTDY*ISVTQNS 351
+L+++ + A+P R+ SGK++ ++SHHT D S+T S
Sbjct: 706 ALFDAASLATPKREMSGKTINPVHIESHHTIGDIFRSITHLS 747
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,770
Number of Sequences: 27780
Number of extensions: 416195
Number of successful extensions: 1051
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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