Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0362
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 ESGAGASPRKRSGKSLGEGRLKSHHTHT 321
           +SGA AS R  +  S  E   +S HT T
Sbjct: 264 DSGAAASDRPPASASSNEHEAESEHTST 291


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 218 CCCFPCTSLE 247
           C C PCTS+E
Sbjct: 113 CMCRPCTSVE 122


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 160 KESYNLADDKNVIASPLGVMLLLSLYESGAGASPRKRSGKSLGEGRLKSHHTHTDY*ISV 339
           +E + L    N I S +G ++ L +  S   A+P +      G+        H D  ++V
Sbjct: 780 REGFYLCQASNGIGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTV 839

Query: 340 T 342
           T
Sbjct: 840 T 840


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 160 KESYNLADDKNVIASPLGVMLLLSLYESGAGASPRKRSGKSLGEGRLKSHHTHTDY*ISV 339
           +E + L    N I S +G ++ L +  S   A+P +      G+        H D  ++V
Sbjct: 776 REGFYLCQASNGIGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTV 835

Query: 340 T 342
           T
Sbjct: 836 T 836


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 628 VERNVPVPLEENDVKHCNGRGG 563
           +ERN  VP   N V +  G+GG
Sbjct: 86  IERNNGVPSSLNVVTNKKGKGG 107


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 366 SRISGRILRNADLIIRMCV 310
           SRIS RI RN  L+   C+
Sbjct: 34  SRISNRISRNRVLLRGQCI 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,526
Number of Sequences: 438
Number of extensions: 4865
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)