Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0361
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24977| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_31855| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_31075| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)                 28   6.1  

>SB_24977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 201 SQKN*SKSPSSIFNIKSRTNSLSPSAKSKGVRFVSA 308
           ++KN +K   +   +   TNS SPS KSKG   VSA
Sbjct: 54  ARKNKAKDIEAYSTLYPETNSDSPSVKSKGALLVSA 89


>SB_31855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 201 SQKN*SKSPSSIFNIKSRTNSLSPSAKSKGVRFVSA 308
           ++KN +K   +   +   TNS SPS KSKG   VSA
Sbjct: 54  ARKNKAKDIEAYSTLYPETNSDSPSVKSKGALLVSA 89


>SB_31075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 201 SQKN*SKSPSSIFNIKSRTNSLSPSAKSKGVRFVSA 308
           ++KN +K   +   +   TNS SPS KSKG   VSA
Sbjct: 54  ARKNKAKDIEAYSTLYPETNSDSPSVKSKGALLVSA 89


>SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)
          Length = 465

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = -1

Query: 266 KRVSSGFNIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLI 102
           KR S+ F+ +    GF       +++ + +   ++++NM GYN++  +  K+ +I
Sbjct: 289 KRSSTHFS-KILTEGFTYTIYDRFTNYVMVIETILVLNMTGYNVKVVYITKIFII 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,016,717
Number of Sequences: 59808
Number of extensions: 100373
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)