Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0361
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54930.1 68416.m06087 serine/threonine protein phosphatase 2A...    28   5.0  

>At3g54930.1 68416.m06087 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 497

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 159 NN*NHSYK*NT*IFSQKN*SKSPSSIFNIKSRTNSLSPS 275
           NN N++   NT +   +  + +PSS+ N +S+T + SPS
Sbjct: 24  NNNNNNTSTNTVVRGSRTTTPAPSSVSNGESQTTAQSPS 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,645,008
Number of Sequences: 28952
Number of extensions: 79941
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)