Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0360
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    30   0.40 
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    28   1.6  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   3.7  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   4.9  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.9  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   6.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.5  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 627 SNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERLRSRTVSRTGCHSRRT 463
           S  A  K SP +   SA       +PPT T+  +  PE+ R     +T  HS+RT
Sbjct: 434 SATATPKRSPSATPTSALPPIGKFAPPT-TAKAQPAPEKRRGEPAVQTRNHSKRT 487


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 294 YLDAQ-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 398
           Y DA  Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 70  YTDAGGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 401 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 297
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 115 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 213
           MGK+S+ + A IAS+ + ++  P +R      H
Sbjct: 1   MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 616 GHEGKPGLRHGLGERL 569
           G EGKPG+  G+GE L
Sbjct: 72  GTEGKPGVSRGVGEEL 87


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 639 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSV 529
           PR+    A++K +  S TAS      ++SP +  SSV
Sbjct: 96  PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSV 132


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 77  ISKSPSCGF*KQQWERYLYF 136
           + K P CGF    W  +L+F
Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,230
Number of Sequences: 5004
Number of extensions: 61125
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)