Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0360
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                        139   2e-33
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    33   0.18 
SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7)                     29   3.9  
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.2  
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)                        28   9.1  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score =  139 bits (337), Expect = 2e-33
 Identities = 63/83 (75%), Positives = 70/83 (84%)
 Frame = +3

Query: 252 KYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLL 431
           KY+  G  PEPL NY+DAQYYG I+IGTPPQ F VVFDTGSSNLWVPSKKC +TNIACLL
Sbjct: 25  KYE-GGDVPEPLINYMDAQYYGEITIGTPPQKFTVVFDTGSSNLWVPSKKCSWTNIACLL 83

Query: 432 HNKYDSRKSKTYVANGTQFAIQY 500
           H+KYDS KS TY  NGT+FAI+Y
Sbjct: 84  HDKYDSTKSSTYKKNGTEFAIRY 106



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +2

Query: 509 SLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHV 673
           SLSGFLS D V+VGG+ V+ QTFAEA+ EPGL FVAAKFDGILGM FS+I+VD V
Sbjct: 110 SLSGFLSIDTVSVGGIDVKGQTFAEALKEPGLTFVAAKFDGILGMGFSSISVDQV 164



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 676 PVFDNMVAQGLVQ-PVFSFYLN 738
           PVF +MV Q LV  PVFSFYLN
Sbjct: 166 PVFYDMVLQKLVPAPVFSFYLN 187


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 309 YYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHY 410
           YY   ++G+PPQ   V+ DTGSSN  V +    Y
Sbjct: 40  YYIASNLGSPPQRINVLVDTGSSNFAVAASAHPY 73


>SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7)
          Length = 333

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 509 SLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHV 673
           +L G    D  T GGLK  R T   +VS  GL  V    DG L +    +  +++
Sbjct: 66  ALPGNTRMDSHTGGGLKGIRITANVSVSVYGLGLVDQSSDGFLALPVGLLGTEYI 120


>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1356

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -1

Query: 676 GHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPA 548
           GH+V  D     PE    LG   G+   R  +GE   P  + A
Sbjct: 629 GHIVSADGVATDPEKTKALGSGRGQKSTRKVIGELWTPECQAA 671


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 699  SHHVVEHRVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERK 520
            S  VV  R+  +   +    P   S + +  ASP   T+S  + R+ LSP + TSSV   
Sbjct: 3085 SVEVVVARLDGTLDFLTLISPTASSVMFSLDASPVKRTSSPRMSRKPLSPESGTSSVSGD 3144

Query: 519  P 517
            P
Sbjct: 3145 P 3145


>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 538 CHRGRAQGAAPDVRRGRVGARACLRGRQVRRDPRDGLQHYRSGPCDPV 681
           C R R+ G +P       G  AC R R     P D ++ Y + PCD V
Sbjct: 438 CDRVRSHGNSPCDCVRLYGNSACDRVRLHGNSPCDRVRLYGNSPCDRV 485


>SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)
          Length = 583

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = -1

Query: 685 RTPGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHGDIISGEEAGEAP 506
           R   H     SA+G    P  L G   +P L   +   L+     A   I++     +  
Sbjct: 448 RVLSHSSSSGSADGIMSHPEGLLGVPQRPTLGPDITNVLSLAGMVAESSIMTESGVSKLR 507

Query: 505 EPYCIANWVPFATYVLDLRLSYLL 434
               IAN++PF   VL  RL Y++
Sbjct: 508 NDNFIANFLPFYVIVLWQRLEYII 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,442,732
Number of Sequences: 59808
Number of extensions: 511450
Number of successful extensions: 1933
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)