Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0357
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    40   2e-05
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    39   3e-05
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    36   2e-04
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    36   2e-04
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    36   4e-04
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    33   0.003
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    26   0.32 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   3.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.1  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   5.1  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 453 RNERVRQGLLYQRGGKRFPCK--ICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFT 626
           +   ++  L +  G + F C    C + +T      RH  T H  + K F CPIC K F 
Sbjct: 328 KTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRT-HTGE-KRFACPICNKRFM 385

Query: 627 RKDNMIAHLK 656
           R D++  H+K
Sbjct: 386 RSDHLAKHVK 395



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 453 RNERVRQGLLYQRGGKRFPCKICARVYTHISNFCRHYVT 569
           R++ +++ L    G KRF C IC + +    +  +H  T
Sbjct: 358 RSDELQRHLRTHTGEKRFACPICNKRFMRSDHLAKHVKT 396


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 492 GGKRFPCKICARVYTHISNFCRHY-VTSHKKDVKVF-PCPICFKEFTRKDNMIAHLKI 659
           G + F CKIC R +T   N   H  V   K  ++V   CP+C K+FT    +  H+++
Sbjct: 159 GERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRL 216


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 453 RNERVRQGLLYQRGGKRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRK 632
           R   ++  L    G K + C  C + ++  +N   H V +H  + K F CP+C + F++ 
Sbjct: 5   RPSTLKTHLRTHSGEKPYRCIDCNKSFSQAANLTAH-VRTHSGE-KPFRCPVCDRRFSQS 62

Query: 633 DNMIAHLK 656
            ++  H++
Sbjct: 63  SSVTTHMR 70



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 492 GGKRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAHLKI 659
           G K F C +C R ++  S+   H + +H  + + + C +C K F+    +  HL+I
Sbjct: 46  GEKPFRCPVCDRRFSQSSSVTTH-MRTHSGE-RPYRCRLCKKAFSDSSTLTKHLRI 99



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 492 GGKRFPCKICARVYTHISNFCRH 560
           G K + CK+C   ++   N  RH
Sbjct: 102 GEKPYECKLCLLRFSQSGNLNRH 124


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 453 RNERVRQGLLYQRGGKRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRK 632
           R   ++  L    G K + C  C + ++  +N   H V +H  + K F CP+C + F++ 
Sbjct: 261 RPSTLKTHLRTHSGEKPYRCIDCNKSFSQAANLTAH-VRTHSGE-KPFRCPVCDRRFSQS 318

Query: 633 DNMIAHLK 656
            ++  H++
Sbjct: 319 SSVTTHMR 326



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 492 GGKRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAHLKI 659
           G K F C +C R ++  S+   H + +H  + + + C +C K F+    +  HL+I
Sbjct: 302 GEKPFRCPVCDRRFSQSSSVTTH-MRTHSGE-RPYRCRLCKKAFSDSSTLTKHLRI 355



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 492 GGKRFPCKICARVYTHISNFCRH 560
           G K + CK+C   ++   N  RH
Sbjct: 358 GEKPYECKLCLLRFSQSGNLNRH 380


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 498 KRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAH 650
           ++F CK C R +T   N   H  T    D + + C IC K F R+D++  H
Sbjct: 78  RQFICKYCNRQFTKSYNLLIHERTH--TDERPYSCDICGKAFRRQDHLRDH 126



 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 564 VTSHKKDVKVFPCPICFKEFTRKDNMIAH 650
           V    K  + F C  C ++FT+  N++ H
Sbjct: 70  VAGKLKPKRQFICKYCNRQFTKSYNLLIH 98


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 504 FPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAHLKI 659
           F C++C R + +  +  +++  +H  + K F C  C K FTR  ++  H+++
Sbjct: 135 FTCEVCNRSFGY-KHVLQNHERTHTGE-KPFECQECHKRFTRDHHLKTHMRL 184



 Score = 30.3 bits (65), Expect = 0.015
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = +3

Query: 453 RNERVRQGLLYQRGGKRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRK 632
           R+  ++  +    G + + C+ C R +  ++N  RH +  H  + + + C  C  +F+  
Sbjct: 174 RDHHLKTHMRLHTGERPYRCEHCDRQFVQVANLRRH-LRVHTGE-RPYGCEHCSMKFSDS 231

Query: 633 DNMIAHLKI 659
           + + AH+ I
Sbjct: 232 NQLKAHVLI 240


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 588 KVFPCPICFKEFTRKDNMIAHLKI 659
           K F C  C K FTR  ++  H+++
Sbjct: 8   KPFECQECHKRFTRDHHLKTHMRL 31



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = +3

Query: 453 RNERVRQGLLYQRGGKRFPCKICARVYTHISNFCRH 560
           R+  ++  +    G + + C+ C R +  ++N  RH
Sbjct: 21  RDHHLKTHMRLHTGERPYRCEHCDRQFVQVANLRRH 56


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 637 LSLRVNSLKQIGHGNTLTSFLC 572
           L L  NS+  + HG  L  F C
Sbjct: 374 LDLSWNSISSLSHGGQLARFKC 395


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 656 LQVRNHVVLTREFFETNRAREHLNIFLM*SNIVSAKVADVC 534
           L V  +V++    F+T   R   NIFL+  ++    V  VC
Sbjct: 81  LGVIGNVMVPIVIFKTKDMRNSTNIFLVNLSVADLMVLLVC 121


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 656 LQVRNHVVLTREFFETNRAREHLNIFLM*SNIVSAKVADVC 534
           L V  +V++    F+T   R   NIFL+  ++    V  VC
Sbjct: 81  LGVIGNVMVPIVIFKTKDMRNSTNIFLVNLSVADLMVLLVC 121


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 341 KLFCSNSAANNC 306
           K+FC+ S+ +NC
Sbjct: 487 KMFCNESSVSNC 498


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 216  LNKFLALILDIWGCSFLLFFG 154
            L+K +    +I+G   LLFFG
Sbjct: 1311 LSKLIKSFNEIYGVPLLLFFG 1331


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 331 VLIQPQTIVWQELASRQFQEEIC 263
           VL+Q + IVW  L    F   IC
Sbjct: 264 VLVQSEKIVWLHLVYISFLGIIC 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,633
Number of Sequences: 336
Number of extensions: 3310
Number of successful extensions: 26
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)