Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0357
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    41   1e-04
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    40   2e-04
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    39   7e-04
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    39   7e-04
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    38   0.001
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    34   0.021
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    31   0.11 
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    29   0.45 
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    29   0.59 
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    28   1.4  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   1.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.4  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   5.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   7.3  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   7.3  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   9.7  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    25   9.7  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +3

Query: 492 GGKRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAHLKI 659
           GGK F C  C++ +    +  RH  + H  + K F C IC K F+R+DN+  H ++
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSE-KPFVC-ICGKRFSRRDNLRQHERL 472


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 498 KRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPC--PICFKEFTRKDNMIAHLK 656
           K + C  C RV+    +  RH + SH  + K F C  P C K FTR+D +I H++
Sbjct: 2   KSYECPFCKRVFHRQEHQVRH-IRSHTGE-KPFECSYPSCKKRFTRRDELIRHVR 54



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 585 VKVFPCPICFKEFTRKDNMIAHLK 656
           +K + CP C + F R+++ + H++
Sbjct: 1   MKSYECPFCKRVFHRQEHQVRHIR 24


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 462 RVRQGLLYQRGGKRFPCKI--CARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKD 635
           + ++   YQ G  R+ C    C + +T   +  RH+  SH    K F CP C   FTR D
Sbjct: 3   KAKKSRAYQEGDIRYKCDFQGCTKSFTRKEHARRHF-RSHTNS-KAFICPHCSSSFTRSD 60

Query: 636 NMIAHL 653
            +  H+
Sbjct: 61  VLNRHV 66


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 513 KICARVYTHISNFCRHYVTSHKKDVKVFPCPIC--FKEFTRKDNMIAHLKI 659
           +IC  V++   +  RH  T H K   VF C IC   + F+R D ++ HL++
Sbjct: 583 EICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRV 633


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +3

Query: 504 FPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAHLK 656
           FPC  CA+ +T   N  RH    H K  +  PCP C  +  RKD +  H++
Sbjct: 31  FPCDQCAKRFTRHENLTRH-KACHSK-AEPIPCPYCEIKCKRKDLLKRHIQ 79



 Score = 31.1 bits (67), Expect = 0.15
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 588 KVFPCPICFKEFTRKDNMIAH 650
           +VFPC  C K FTR +N+  H
Sbjct: 29  RVFPCDQCAKRFTRHENLTRH 49


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 504 FPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAHLKI 659
           + C +C + +  + +  RH  T   +   V   P C K F+R D +  H +I
Sbjct: 26  YKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARI 77


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
 Frame = +3

Query: 498 KRFPCKICARVYTHISNFCRHYVTSHKKDVKVFPC------PI-CFKEFTRKDNMIAH 650
           K++ C+ C R +  + +  RH + SH  + K F C      P  C ++F+R+D ++ H
Sbjct: 68  KQYVCETCTRAFARLEHLKRH-IRSHTNE-KPFTCSEIDGLPTGCGRQFSRRDLLLRH 123


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 504 FPCKICARVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAHLK 656
           F C IC + +    +  RH        +K F C  C + F R D +  H K
Sbjct: 600 FQCSICKKSFARQHDKRRH--EQLHTGIKAFACVTCNQRFARMDALNRHYK 648


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 450 RRNERVRQGLLYQRGGKRFPCKIC---ARVYTHISNFCR 557
           R++E+    LL Q GG +    +C    +VYT++SNF R
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 480 IVPDGLVRFFVVIADTTHIVFPYWRRKNAMFP 385
           +VP  L  F VV  +   I+ PY+ R   +FP
Sbjct: 194 VVPAALFTFEVVCPEKLEIIHPYYHRICTLFP 225


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +3

Query: 495 GKRFPCKICAR-VYTHISNFCRHYVTSHK----KDVKVFPCPICFKEFTRKDNMI 644
           GK FPC+IC   VY     F +H+         K + + P P+ F + T  D  +
Sbjct: 394 GKEFPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPL-FNQITSIDEAL 447


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -3

Query: 303 GKSWHQDSFRRKFVKCVNAGFKLD 232
           GK WH D F     KCVN   KLD
Sbjct: 41  GKCWHSDCF-----KCVNCNKKLD 59


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 457 FLRGNCRYYPYC-FSLLAKEKCDVPNLFATN 368
           FL+GNC++ P C  S       ++PN  +TN
Sbjct: 77  FLKGNCKFGPKCALSHALPGNTNLPNGTSTN 107


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 525 RVYTHISNFCRHYVTSHKKDVKVFPCPICFKEFTRKDNMIAH 650
           RV   I   C HY  S K  + +    ICF     K++++++
Sbjct: 114 RVLQIIPIICTHYAASMKLPILISLFRICFNLHNSKNSVVSN 155


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 267 FVKCVNAGFKLDKPD 223
           FVK +NA F+LD PD
Sbjct: 280 FVKFLNASFRLDYPD 294


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 15  PIMTRTMVTMNRSNTNIIPREAA 83
           PIM RT +  N SN  +  REA+
Sbjct: 312 PIMKRTTLVANTSNMPVAAREAS 334


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 415 RKNNMGSIGNYHEETNESVRDYCIKEGENVFHAKYVQGFIH 537
           R   + SI  Y+E    + RDY +  G N  H   V    H
Sbjct: 362 RSKEIASILGYNETEYVAYRDYLVVHGLNSHHDSQVSSDEH 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,255
Number of Sequences: 5004
Number of extensions: 55019
Number of successful extensions: 202
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)