Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0356
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1) 56 2e-08
SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_52007| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_40315| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_20448| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_9493| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_59236| Best HMM Match : Attractin (HMM E-Value=8.2) 47 1e-05
SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_9995| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_32500| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_24543| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_5288| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_4968| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_3995| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_1350| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_53668| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_53194| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_47973| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_40285| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_24609| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_19187| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_16426| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_11440| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_161| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.047
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28) 27 9.5
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7) 27 9.5
>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
Length = 276
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = -1
Query: 623 ERPTPFMVSHERFLG-ALNTFGSSHSASSAYQNWPTWHRLRSPASSFE*AGVLTHLKFEN 447
E+PTPF+ S ER L FGSS ASS YQN PT R+ P + + G+LT+LKFEN
Sbjct: 58 EQPTPFVGSDERRLWHPYRAFGSSRIASSGYQNGPTRTRIHCPGFNKQ-VGLLTNLKFEN 116
Query: 446 R 444
R
Sbjct: 117 R 117
>SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/37 (64%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = -1
Query: 626 HERPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+E+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 122 YEQPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 158
>SB_52007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 ERPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
E+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 41 EQPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 76
>SB_40315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 ERPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
E+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 38 EQPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 73
>SB_20448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 ERPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
E+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 39 EQPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 74
>SB_9493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 ERPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
E+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 39 EQPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 74
>SB_59236| Best HMM Match : Attractin (HMM E-Value=8.2)
Length = 125
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 ERPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
E+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 80 EQPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 115
>SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/44 (59%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPTWHRLRSPAS 492
+PTPF+ S ER L LN FGSS ASSAYQN P R+ PAS
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQNGPLGTRIHCPAS 45
>SB_9995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/47 (57%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT--WHRLRSPASS 489
+PTPF+ S ER L LN FGSS ASSAYQ WPT H L P S
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPTRNSHSLGDPLES 48
>SB_32500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_24543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_5288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_4968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_3995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_1350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_53668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_53194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_47973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_40285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_24609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_19187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNHAFGSSRIASSAYQKWPT 36
>SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_16426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKWPT 36
>SB_11440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/36 (63%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 ERPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
E+PTPF+ S ER L LN FGSS ASSA Q WPT
Sbjct: 58 EQPTPFVGSDERRLWHLNRAFGSSRIASSALQKWPT 93
>SB_161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN +GSS ASSAYQ WPT
Sbjct: 2 QPTPFVGSDERRLWHLNRAYGSSRIASSAYQKWPT 36
>SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 620 RPTPFMVSHERFLGALN-TFGSSHSASSAYQNWPT 519
+PTPF+ S ER L LN FGSS ASSAYQ PT
Sbjct: 2 QPTPFVGSDERRLWHLNRAFGSSRIASSAYQKGPT 36
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = -2
Query: 253 PSGFPLTST*PGIVHHLSGPSICA 182
P FPL S GIVHHLSGP+ CA
Sbjct: 6 PPEFPLASPYSGIVHHLSGPNRCA 29
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -1
Query: 254 SIRVSPDFDLTRHSSPSFGSQHLCS 180
S RVS F L RHSSPSFGSQ + S
Sbjct: 40 STRVSSGFTLFRHSSPSFGSQQMRS 64
>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1
Query: 317 ISLSPLYPVPTIDLHVR 267
ISLSPLYP TIDLHVR
Sbjct: 38 ISLSPLYPNLTIDLHVR 54
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = -1
Query: 629 CHERPTPFMVSHERFLGALNTFGSSHSASSAYQNWPTWHRLRSPASSFE*AGVL 468
C + +P +HER S S SS WP W R RSPASS + G L
Sbjct: 2514 CIQSASPLSSTHER------KTPESFSESSTNGEWP-WGRRRSPASSNDSYGKL 2560
>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
Length = 307
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 214 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 122
V L+ S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213
>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
Length = 703
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 175 RSEHKCWDPKD--GELCLVRSKSGETLMETVAILTCKSIVGTGYRGERLIEPSSSWFRPK 348
+++ C D ++ GE +KS +T ++ +C+S++ TG + L + S RP+
Sbjct: 303 QNDLSCSDSENEGGESFSTTAKSKDTKANDYSMTSCRSVLATGLNEQSLAKRKESIRRPE 362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,564
Number of Sequences: 59808
Number of extensions: 409070
Number of successful extensions: 990
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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