Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0356
         (629 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    27   0.49 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   2.0  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   3.5  
AF364132-2|AAL35509.1|  411|Anopheles gambiae putative odorant r...    24   4.6  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +3

Query: 75  RTLDVRSGRMKL-SSYVRD----FRTPEASRFQSVNEGAL*AQMLGPERW*TM-PGQVEV 236
           RT  V +G  ++  SY +D    + T E    +SV  G     +LGP  W TM  G +++
Sbjct: 588 RTKRVPAGLQRIIHSYFQDRELVYETSEGPVVRSVTAGVPQGSILGPTLWNTMYDGVLDI 647

Query: 237 RGNPDGD 257
              PD +
Sbjct: 648 ALPPDAE 654


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 629 CHERPTPFMVSHERFLGALNTFGSSHSASSAYQNWPTWH 513
           C+ RP      +E FL A+    S+HS      ++  WH
Sbjct: 110 CYARPRRPEEDYEGFLAAVQLEASTHSQVVIDGDFNAWH 148


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 611 PFMVSHE--RFLGALNTFGSSHSASSAYQNWPTWH 513
           P + +HE  R LGA+    +SHS      ++  WH
Sbjct: 157 PSLSAHEFERLLGAIELEAASHSRVVVAGDFNAWH 191


>AF364132-2|AAL35509.1|  411|Anopheles gambiae putative odorant
           receptor Or3 protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 618 TNAFHGVP*AFFRRLKYVWLIPQRQFCLPKLAHLAPSQISGFIVRVSR 475
           +NAF G+    F+R  Y  L+ Q Q     +    P+++  +++ V+R
Sbjct: 92  SNAFFGMLMFSFQRDNYERLVHQLQDLAALVLQDLPTELGEYLISVNR 139


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,175
Number of Sequences: 2352
Number of extensions: 13119
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)