Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0356
         (629 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    32   1.5  
AL357374-7|CAI13605.1|  336|Homo sapiens RNA binding motif prote...    31   3.4  

>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 206 MVNYAWSGRSQGKP*WR 256
           MVNYAW+GRSQ K  WR
Sbjct: 1   MVNYAWAGRSQRKLWWR 17



 Score = 31.1 bits (67), Expect = 3.4
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 256 TVAILTCKSIVGTGYRG 306
           +VA+LTCKS+V  GYRG
Sbjct: 18  SVAVLTCKSVVRPGYRG 34


>AL357374-7|CAI13605.1|  336|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 336

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -2

Query: 325 MVRLVFRPYTQFRRSICTSESLRSPSGFPLTST*PGIVHHLSGPSICAQSAPSFTD 158
           M+R +F P+ +F  S C  ++L   +GF L    P  V H++     A SA SF D
Sbjct: 137 MLRGIFEPFGRFSDSECAKKALEQLNGFELAGR-PMKVGHVT-ERTDASSASSFLD 190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,569,047
Number of Sequences: 237096
Number of extensions: 1959942
Number of successful extensions: 10857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10857
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)