Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0356
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical
           protein Y69E1A.6 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 568 RLAHPTAPVLLTKIGPLGTVSDLRLHRSSKPE 473
           R  HP     +TK+GP      LRL + S PE
Sbjct: 315 RAQHPIISTQMTKVGPPSADISLRLKKLSAPE 346


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = +1

Query: 379 NFKTVSSGKAND*RHWGRNDLNLFSNFKWVRTP--AYSNDEA---GDLRRCQVGQ 528
           NF  + S K+N    +   + +LFS+F+W RTP  A SN+E    GDL   +  +
Sbjct: 38  NFSNLESPKSNSSSLF---EDSLFSSFRWKRTPERAPSNNELVEHGDLENFEYSE 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,246
Number of Sequences: 27780
Number of extensions: 304254
Number of successful extensions: 566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)