Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0356
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 509 LRSPASSFE*AGVLTHLKFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGN 348
           L S A+S E   + TH +  ++LR  R     S  L DE   K +  ++  EGN
Sbjct: 218 LDSTAASDEDISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGN 271


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 311 LSPLYPVPTID 279
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 311 LSPLYPVPTID 279
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 518 KWANFGKQNWRCGMSQTYLRRL 583
           +W N   + W+  MSQ  L R+
Sbjct: 2   RWINRDGEKWKGKMSQRPLARM 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,891
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)