Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0353
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4JYI9 Cluster: CDNA, clone cssl:d0139; n=5; Danio reri...    33   4.5  
UniRef50_A3I3A3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_A2D9K2 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q54TW4 Cluster: Putative uncharacterized protein; n=1; ...    32   7.9  

>UniRef50_A4JYI9 Cluster: CDNA, clone cssl:d0139; n=5; Danio
           rerio|Rep: CDNA, clone cssl:d0139 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 315

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 107 YCSNFDQCEDTLSIIKYKIQSIVTYVLTNNMLCIIANNYSMHCDIFN 247
           Y +   QCE  L +  YK    V+ + T N   I  N Y + CD++N
Sbjct: 89  YINYGKQCEVALPVTVYKTPDSVS-ISTVNQTMIEGNQYELQCDVYN 134


>UniRef50_A3I3A3 Cluster: Putative uncharacterized protein; n=1;
           Algoriphagus sp. PR1|Rep: Putative uncharacterized
           protein - Algoriphagus sp. PR1
          Length = 276

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
 Frame = +1

Query: 328 FSQSKFHSINDSN--LHRLNLVILKWFNII*YMFQSIYNLKNQVDILTKLLMTSAPSLIY 501
           F +S F S++D+N  L+R +L+I +  NI  ++ + I N ++++    KLL  +  + I 
Sbjct: 38  FGKSFFDSLSDANDALNRSDLLIKENLNIPGHLAEDIINSRSKITEWKKLLNKNDLAFIE 97

Query: 502 LLIDLNPLN 528
           LL   +P N
Sbjct: 98  LLFYSSPTN 106


>UniRef50_A2D9K2 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 827

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 391 LKWFNII*YMFQSIYNLKNQVDILTKLLMTSAPSLIYLLIDLNPLNTFFNNDL 549
           LK  +I   + Q+I     + D   K+L+ + P L+   ID+N LN F  NDL
Sbjct: 12  LKTEHITPILVQAIKEPAEKTDQNDKILVITTPKLLIYSIDMNALNKFSWNDL 64


>UniRef50_Q54TW4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 347

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +1

Query: 328 FSQSKFHSINDSNLHRLNLVILKWFNII*YMFQSIY---NLKNQVDILTKLLMTSAPSLI 498
           +S   F+ +N+S +H   L  ++  NI     QSI+   N  N+VD     L+  A  L 
Sbjct: 150 YSIIPFNKLNESPVHPETLKYIRKINIGIEFTQSIFYIINSNNKVD-----LIVLANPLY 204

Query: 499 YLLIDLNPLNTFFNND 546
             L+DL+ LN  F ND
Sbjct: 205 QKLVDLSSLNISFVND 220


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,754,984
Number of Sequences: 1657284
Number of extensions: 7752128
Number of successful extensions: 17598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17591
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)