Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0353
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    27   1.4  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   3.3  

>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -2

Query: 262 TSISVIK--NITMH--RIVICYNT*HIISKYISYNGLN 161
           TS+SV++  + + H    +IC NT   ISKY +Y G++
Sbjct: 51  TSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGGIH 88


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 213 QITILCIVIFLMTLIEVHT 269
           QITI+ I+IFL  L E++T
Sbjct: 377 QITIMVIIIFLRNLAELYT 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,531
Number of Sequences: 5004
Number of extensions: 37999
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)