Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0353
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358...    28   4.4  
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761...    28   5.8  

>09_02_0625 +
           11334418-11334499,11335067-11335164,11335758-11335831,
           11335996-11336598,11336692-11337185,11338035-11338170,
           11338417-11338488,11338581-11338652,11339078-11339226,
           11340129-11340364,11340567-11340693,11341011-11341079,
           11341172-11341361,11341465-11341857,11342084-11342195
          Length = 968

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 392 NMTKFNLCKLESFIE*NLDCENPSGFIYRISKTDLSKV 279
           N T F++   E FI  ++DC  PSGF Y   KT+++ +
Sbjct: 89  NGTYFHISVDEDFI--SIDCGLPSGFSYVDEKTNITYI 124


>12_01_0825 -
           7611594-7611728,7612061-7612276,7612505-7612589,
           7613170-7613372,7613935-7615723,7616322-7616450,
           7616825-7616928,7618725-7618779,7618860-7618975
          Length = 943

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 SIIKYKIQSIVTYVLTNNMLCIIANNYSMHCD 238
           S +K K+ S ++  L   + C+  N YS HC+
Sbjct: 146 SSVKKKVDSYMSSGLLTQVSCLPLNEYSAHCN 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,785,371
Number of Sequences: 37544
Number of extensions: 171185
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)