Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0353
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF040661-5|AAG24212.1|  209|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical
           protein F54E7.5 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 183 YLLIICYVL*QITILCIVIFLMTL 254
           +LLI C +L  +T  CI++F +TL
Sbjct: 187 HLLIACLILLCLTTFCIIVFFITL 210


>AF040661-5|AAG24212.1|  209|Caenorhabditis elegans Hypothetical
           protein W10G11.3 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 92  TKS*EYCSNFDQCEDTLSIIKYKIQSIVTYVLTNNMLC 205
           TK  E C NF++C  TL     K+ +IV  V T  M C
Sbjct: 75  TKVIEICINFNRCRQTLDCQPDKVFAIV--VNTGLMFC 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,798,882
Number of Sequences: 27780
Number of extensions: 202889
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)