Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0353
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   8.4  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   8.4  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   8.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   8.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   8.4  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 78  ICDKLQNHKSTVQTSTNVKIHYQ**NTKF 164
           +C++L    S   T T VKI +Q   TK+
Sbjct: 35  VCERLNLALSLSLTETQVKIWFQNRRTKW 63


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 499 YLLIDLNPLNTFFNNDLNY 555
           Y+L+  N +    NND N+
Sbjct: 377 YILVLSNKMQKMVNNDFNF 395


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 352 INDSNLHRLNLVILKWFNII 411
           + D    R N  ILK FNI+
Sbjct: 54  VEDEKPQRYNECILKQFNIV 73


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 352 INDSNLHRLNLVILKWFNII 411
           + D    R N  ILK FNI+
Sbjct: 54  VEDEKPQRYNECILKQFNIV 73


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 499 YLLIDLNPLNTFFNNDLNY 555
           Y+L+  N +    NND N+
Sbjct: 377 YILVLSNKMQKMVNNDFNF 395


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 499 YLLIDLNPLNTFFNNDLNY 555
           Y+L+  N +    NND N+
Sbjct: 377 YILVLSNKMQKMVNNDFNF 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,422
Number of Sequences: 438
Number of extensions: 3078
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)