Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0352
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    83   4e-17
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    27   2.9  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    26   3.8  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   6.7  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 82.6 bits (195), Expect = 4e-17
 Identities = 35/61 (57%), Positives = 47/61 (77%)
 Frame = -1

Query: 252 IIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVI 73
           +I+T+ DVIHS  +PSLGIK D  P RLNQ +  I+R G+F+GQCSE+CG  HS +PIV+
Sbjct: 173 LILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVV 232

Query: 72  E 70
           +
Sbjct: 233 Q 233



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
 Frame = -2

Query: 509 TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDF-----NNIEFDS 345
           T+IPA  LI +A                 +T+K+IG Q +  YE +DF       + FDS
Sbjct: 82  TLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDS 141

Query: 344 YIIPSNEIKNNEFRLLDVDNRIILPINNQIEL 249
           Y++P  +++    R L+VDNR++LPI+ +I L
Sbjct: 142 YMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRL 173


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 241 CNYNSIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 363
           C    +W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 17  CGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLM 57


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 241 CNYNSIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 363
           C    +W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 17  CGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLM 57


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 262 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 375
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,330
Number of Sequences: 5004
Number of extensions: 36154
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)