Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0352
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58485| Best HMM Match : COX2 (HMM E-Value=0) 107 9e-24
SB_14168| Best HMM Match : COX2 (HMM E-Value=0) 107 9e-24
SB_12233| Best HMM Match : COX2 (HMM E-Value=0) 85 6e-17
SB_46219| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_19857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_15583| Best HMM Match : WXG100 (HMM E-Value=2) 28 5.3
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
Length = 239
Score = 107 bits (256), Expect = 9e-24
Identities = 45/61 (73%), Positives = 54/61 (88%)
Frame = -1
Query: 252 IIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVI 73
++ITA DVIHS +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVI
Sbjct: 162 VLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVI 221
Query: 72 E 70
E
Sbjct: 222 E 222
Score = 84.6 bits (200), Expect = 6e-17
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = -2
Query: 509 TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYII 336
TIIPA LIFIA +T+K++GHQ Y YEYSD+ + +EFDSY++
Sbjct: 74 TIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMV 133
Query: 335 PSNEIKNNEFRLLDVDNRIILPINNQIEL 249
P+ ++ +FRLL+VDNR+++PIN + +
Sbjct: 134 PTTDLNQGDFRLLEVDNRLVVPINTHVRV 162
>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
Length = 239
Score = 107 bits (256), Expect = 9e-24
Identities = 45/61 (73%), Positives = 54/61 (88%)
Frame = -1
Query: 252 IIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVI 73
++ITA DVIHS +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVI
Sbjct: 162 VLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVI 221
Query: 72 E 70
E
Sbjct: 222 E 222
Score = 84.6 bits (200), Expect = 6e-17
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = -2
Query: 509 TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYII 336
TIIPA LIFIA +T+K++GHQ Y YEYSD+ + +EFDSY++
Sbjct: 74 TIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMV 133
Query: 335 PSNEIKNNEFRLLDVDNRIILPINNQIEL 249
P+ ++ +FRLL+VDNR+++PIN + +
Sbjct: 134 PTTDLNQGDFRLLEVDNRLVVPINTHVRV 162
>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
Length = 219
Score = 84.6 bits (200), Expect = 6e-17
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = -2
Query: 509 TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYII 336
TIIPA LIFIA +T+K++GHQ Y YEYSD+ + +EFDSY++
Sbjct: 74 TIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMV 133
Query: 335 PSNEIKNNEFRLLDVDNRIILPINNQIEL 249
P+ ++ +FRLL+VDNR+++PIN + +
Sbjct: 134 PTTDLNQGDFRLLEVDNRLVVPINTHVRV 162
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = -1
Query: 252 IIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIF 130
++ITA DVIHS +P+L +K+DA PGRLNQT FFI + F
Sbjct: 162 VLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202
>SB_46219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 226 NYIGCCNYNSIWLFIGKIIRLSTSNSRNSLFFIS 327
NY CN+ IW GK I L S + NS+ FIS
Sbjct: 232 NYRRQCNFKFIWTANGK-IWLRESETSNSIGFIS 264
>SB_19857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 226 NYIGCCNYNSIWLFIGKIIRLSTSNSRNSLFFIS 327
NY CN+ IW GK I L S + NS+ FIS
Sbjct: 136 NYRRQCNFKFIWTANGK-IWLRESETSNSIGFIS 168
>SB_15583| Best HMM Match : WXG100 (HMM E-Value=2)
Length = 279
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 226 NYIGCCNYNSIWLFIGKIIRLSTSNSRNSLFFIS 327
NY CN+ IW GK I L S + NS+ FIS
Sbjct: 232 NYRRQCNFKFIWTANGK-IWLRESETSNSIGFIS 264
>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 281 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFS 391
YD +H IHY H+ ++ IQYY NIH ++
Sbjct: 31 YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYN 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,701
Number of Sequences: 59808
Number of extensions: 208292
Number of successful extensions: 364
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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