Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0352
         (621 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT016024-1|AAV36909.1|  744|Drosophila melanogaster RE13419p pro...    29   6.7  
AE014135-199|AAN06582.2|  523|Drosophila melanogaster CG11155-PC...    29   6.7  
AE014135-198|AAN06581.2|  855|Drosophila melanogaster CG11155-PB...    29   6.7  
AE014135-197|AAF59382.3|  910|Drosophila melanogaster CG11155-PA...    29   6.7  

>BT016024-1|AAV36909.1|  744|Drosophila melanogaster RE13419p
           protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 386 RYEYSDFNNIEFDSYIIPS---NEIKNNEFRLLDVDNRIILPINNQIE 252
           RY Y  F   + ++Y +     N +    FRL+DVD++  L + NQ++
Sbjct: 83  RYHYM-FTTFDLETYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQ 129


>AE014135-199|AAN06582.2|  523|Drosophila melanogaster CG11155-PC,
           isoform C protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 386 RYEYSDFNNIEFDSYIIPS---NEIKNNEFRLLDVDNRIILPINNQIE 252
           RY Y  F   + ++Y +     N +    FRL+DVD++  L + NQ++
Sbjct: 249 RYHYM-FTTFDLETYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQ 295


>AE014135-198|AAN06581.2|  855|Drosophila melanogaster CG11155-PB,
           isoform B protein.
          Length = 855

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 386 RYEYSDFNNIEFDSYIIPS---NEIKNNEFRLLDVDNRIILPINNQIE 252
           RY Y  F   + ++Y +     N +    FRL+DVD++  L + NQ++
Sbjct: 249 RYHYM-FTTFDLETYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQ 295


>AE014135-197|AAF59382.3|  910|Drosophila melanogaster CG11155-PA,
           isoform A protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 386 RYEYSDFNNIEFDSYIIPS---NEIKNNEFRLLDVDNRIILPINNQIE 252
           RY Y  F   + ++Y +     N +    FRL+DVD++  L + NQ++
Sbjct: 249 RYHYM-FTTFDLETYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQ 295


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,874,161
Number of Sequences: 53049
Number of extensions: 311771
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)