Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0352
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.60 
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    24   1.0  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    24   1.0  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    24   1.0  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    24   1.0  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    24   1.0  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    24   1.0  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    24   1.0  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    24   1.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.0  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   5.5  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   5.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   5.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.7  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNY+N  N++ NN    Y
Sbjct: 91  NYNYNNNYNNYNNNYNTNY 109


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNYSN  N   NN++  Y
Sbjct: 88  NYNYSNYNNYNNNNNYNNY 106


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNYSN  N   NN++  Y
Sbjct: 88  NYNYSNYNNYNNNNNYNNY 106


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNYSN  N   NN++  Y
Sbjct: 88  NYNYSNYNNYNNNNNYNNY 106


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNYSN  N   NN++  Y
Sbjct: 88  NYNYSNYNNYNNNNNYNNY 106


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNYSN  N   NN++  Y
Sbjct: 88  NYNYSNYNNYNNNNNYNNY 106


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNYSN  N   NN++  Y
Sbjct: 88  NYNYSNYNNYNNNNNYNNY 106


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNYSN  N   NN++  Y
Sbjct: 88  NYNYSNYNNYNNNNNYNNY 106


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           NYNYSN  N   NN++  Y
Sbjct: 88  NYNYSNYNNYNNNNNYNNY 106


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSFIRY 197
           N NY+N  N++ NN++  Y
Sbjct: 331 NNNYNNNYNNYNNNNYNNY 349


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 91  NYNYNNNYNNYNKHNY 106


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 324 NYNYNNNYNNYNKHNY 339


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 253 NYNYSNRCNSFMNNSF 206
           NYNY+N  N++  +++
Sbjct: 324 NYNYNNNYNNYNKHNY 339


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 439 SSNKYNNRNDGKAMKINV 492
           ++N YNN N  K +  N+
Sbjct: 99  NNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 439 SSNKYNNRNDGKAMKINV 492
           ++N YNN N  K +  N+
Sbjct: 99  NNNNYNNNNYNKKLYYNI 116


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 37  NSINKVFD*NTFNYNRYKTMISSTNF 114
           N+ N  ++ N  NYN YK +  + N+
Sbjct: 99  NNYNN-YNYNNNNYNNYKKLYYNINY 123


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 403 PIDFSVISGLLSSSNKYNNRNDGKAMKINV 492
           P   S +S   + SN Y N N+ K +  N+
Sbjct: 301 PKIISSLSNSCNYSNNYYNNNNYKKLYYNI 330


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 259 KLNYNYSNRCNSFMNNSF 206
           K NYN +N  N+  NN++
Sbjct: 330 KYNYNNNNYNNNNYNNNY 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,382
Number of Sequences: 438
Number of extensions: 2702
Number of successful extensions: 37
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)