Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0351
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    93   4e-20
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    29   0.68 

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 48/89 (53%), Positives = 56/89 (62%)
 Frame = -1

Query: 516 IRFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 337
           I F+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 336 GLSLNSYILKIQFFTIFIGVNITFFPQLF 250
           GL  N  +  IQF+ +FIGVNI F PQ F
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVFGPQHF 436



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 33/57 (57%), Positives = 46/57 (80%)
 Frame = -2

Query: 704 SNGLLGFIV*AHHIFTVGIDIDTRAYLTSATIIIAVPTGIKIFR*LATIHGTQINYN 534
           S  LLG +V +HH+FTVG+D+DTRAY ++AT++IA+PTGIKIF  LAT+ G  I ++
Sbjct: 285 SIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWS 341



 Score = 29.1 bits (62), Expect = 0.68
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 253 FLGLAGIPRRYSDYPD 206
           FLGL G+PRR  DYP+
Sbjct: 436 FLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 340 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFLGL 242
           +RPF KFL  K  IF + YW +  +  T +LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,706
Number of Sequences: 5004
Number of extensions: 33966
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)