Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0351
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 107 7e-24
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012) 30 2.2
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22) 29 2.9
SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018) 29 5.1
SB_47308| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 9.0
SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 107 bits (258), Expect = 7e-24
Identities = 53/89 (59%), Positives = 60/89 (67%)
Frame = -1
Query: 516 IRFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 337
I FVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS + T
Sbjct: 46 IGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKIT 105
Query: 336 GLSLNSYILKIQFFTIFIGVNITFFPQLF 250
G N KI F+ +FIGVNITFFPQ F
Sbjct: 106 GYCYNELYGKIHFWIMFIGVNITFFPQHF 134
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = -2
Query: 650 IDIDTRAYLTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGLYF 501
+++DTRAY T+AT+IIAVPTGIK+F LAT++G I + +L +G F
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVF 50
Score = 36.7 bits (81), Expect = 0.019
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Frame = -3
Query: 319 LYTKNSIFYNIYWSKYNIFSTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 140
LY K + F FLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 171
Query: 139 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 8
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 172 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = -1
Query: 339 TGLSLNSYILKIQFFTIFIGVNITFFPQLF 250
TG N KI F+ +FIGVNITFFPQ F
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHF 48
Score = 36.7 bits (81), Expect = 0.019
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Frame = -3
Query: 319 LYTKNSIFYNIYWSKYNIFSTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 140
LY K + F FLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 85
Query: 139 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 8
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 86 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.059
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -3
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.059
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -3
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.059
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -3
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.059
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -3
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.059
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -3
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 253 FLGLAGIPRRYSDYPD 206
FLGLAG PRRYSD+ D
Sbjct: 2 FLGLAGFPRRYSDFAD 17
>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
Length = 558
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 731 LFRNNLCYTSNGLLGFIV*AHHIFTVGIDIDT 636
+F+N+LCY +G L H I+ G D+ T
Sbjct: 145 IFQNDLCYHIDGSLSMYADDHQIYHTGSDLST 176
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 671 HHIFTVGIDIDTRAYLTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 522
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 731 LFRNNLCYTSNGLLGFIV*AHHIFTVGIDIDT 636
+F+N+LCY +G L H I+ G D+ T
Sbjct: 496 IFQNDLCYHIDGNLSMYADDHQIYHTGSDLST 527
>SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)
Length = 884
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 731 LFRNNLCYTSNGLLGFIV*AHHIFTVGIDIDT 636
+F+N+LCY +G L H I+ G D+ T
Sbjct: 356 IFQNDLCYHIDGNLSMYADDHQIYHTGSDLST 387
>SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)
Length = 491
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 731 LFRNNLCYTSNGLLGFIV*AHHIFTVGIDIDT 636
+F+N+LCY G L H I+ G D+ T
Sbjct: 382 IFQNDLCYHIYGSLSMYADDHQIYHTGSDLST 413
>SB_47308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 528 YFMKIRFVFLFTVGGLTGVILANSSIDIT 442
Y + I+FVF+ T+G L G ++ + ID T
Sbjct: 10 YGLGIQFVFMRTIGALPGPVIIGTIIDHT 38
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 81 ISHHQLNDIKIYHQQNIHIMNYQF 10
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
>SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 731 LFRNNLCYTSNGLLGFIV*AHHIFTVGIDIDT 636
+F+N+LCY +G+L H I+ G + T
Sbjct: 295 IFQNDLCYHIDGILSMFANDHQIYHTGRYLST 326
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 352 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIF 263
+ FIY + FL +KN F+ YW+ YN F
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAF 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,003,554
Number of Sequences: 59808
Number of extensions: 202566
Number of successful extensions: 340
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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