Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0350
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 700 ALGHLRYSCDRCTAPVKLPAWSVLETG 780
           A+GH + SC  C+ P +    S  E+G
Sbjct: 381 AMGHWQMSCVACSPPPRQTPPSRKESG 407


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 276 RTTGRSAECMNQMSETAVPLVLSS 347
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 323 SFGHLVHALGRAAGGAKLPSAGLA*TPLRPKP 228
           S   LV A+   AGG   PSAG    P+ P P
Sbjct: 393 SMSALVSAVRSPAGGQLPPSAG---APMPPIP 421


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 378 GKTNLSHDGLNPAHVPF*WVNNPTLG 455
           GK N      +PA  PF W ++ + G
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAG 429


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 756 GEFDWGGTSVTRITQV 709
           G F WG    TR T++
Sbjct: 63  GNFSWGSECTTRKTRI 78


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 378 GKTNLSHDGLNPAHVPF*WVNNPTLG 455
           GK N      +PA  PF W ++ + G
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAG 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,804
Number of Sequences: 438
Number of extensions: 4538
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)