Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0348
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    86   6e-18
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...    28   1.2  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   2.7  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   2.7  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 39/84 (46%), Positives = 57/84 (67%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           G+++A++ST VET +P SEI PGL LLG + + F  V + YEP+ DG++ Q +IS+S DA
Sbjct: 347 GYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDA 406

Query: 543 TTHFETTCLDVLKFINMVLGKNLI 472
           T+HFET   DV      + G +L+
Sbjct: 407 TSHFETLTCDVRDIYKRMTGTDLV 430


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 615 VTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKFINMVLGKNLI 472
           +T +Y PID+  Q ++ I + Y A +    T  + L+  N++ GKN I
Sbjct: 16  LTKFYTPIDESIQQKL-IGDIYAAVSTRPPTACNFLE-SNLIAGKNRI 61


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 172 SAQVKSCLYVIL*LICIPIW 113
           +  + + L+ IL L+CIPIW
Sbjct: 242 TCSISAALFFILLLVCIPIW 261


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 172 SAQVKSCLYVIL*LICIPIW 113
           +  + + L+ IL L+CIPIW
Sbjct: 232 TCSISAALFFILLLVCIPIW 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,230
Number of Sequences: 5004
Number of extensions: 57677
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)