Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0348
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353...    94   9e-20
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833...    93   2e-19
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936...    88   8e-18
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161...    86   3e-17
10_05_0057 - 8660321-8660422,8661022-8661050,8662286-8662676           29   3.7  

>05_04_0333 +
           20333243-20333329,20335048-20335110,20335276-20335359,
           20335720-20335827,20335969-20336141,20337135-20337246,
           20337468-20337548,20337635-20337697,20337779-20337880,
           20338070-20338194,20338317-20338527,20338625-20338699,
           20338990-20339043
          Length = 445

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 42/83 (50%), Positives = 56/83 (67%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           G FIA VST  ET+ PESE++PG+ LLG + + F  + D YEP+++ S    F+S SYDA
Sbjct: 348 GKFIAFVSTEAETDHPESELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDA 407

Query: 543 TTHFETTCLDVLKFINMVLGKNL 475
           TTHFETT  DVL    ++ GK +
Sbjct: 408 TTHFETTVTDVLNMYTLITGKTV 430


>05_03_0407 +
           13582595-13582681,13583067-13583129,13583289-13583372,
           13583757-13583864,13584018-13584190,13585190-13585301,
           13585424-13585504,13585611-13585673,13585764-13585865,
           13586063-13586187,13586316-13586526,13586614-13586688,
           13586950-13587003
          Length = 445

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 41/81 (50%), Positives = 56/81 (69%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           G FIA VST  ET++P+SE++PG+ LLG + + F  + D YEP+++ S    F+S SYDA
Sbjct: 348 GKFIAFVSTEAETDNPQSELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDA 407

Query: 543 TTHFETTCLDVLKFINMVLGK 481
           TTHFETT  DVL    ++ GK
Sbjct: 408 TTHFETTVTDVLNMYTLITGK 428


>03_02_0544 -
           9362615-9362674,9362783-9362857,9362934-9363144,
           9363279-9363403,9363492-9363593,9363676-9363738,
           9363817-9363897,9364248-9364359,9364454-9364626,
           9364722-9364829,9364909-9364992,9365131-9365193,
           9365652-9365738
          Length = 447

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 39/83 (46%), Positives = 52/83 (62%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           G FIA VST  E + PE E++PG+ LLG + + F  + D YEP +   +   F++ SYDA
Sbjct: 348 GKFIAFVSTEAEADKPEIELKPGIDLLGPVEETFFDIYDRYEPTNTADEDNCFVTNSYDA 407

Query: 543 TTHFETTCLDVLKFINMVLGKNL 475
           TTHFETT  DVL   + + GK L
Sbjct: 408 TTHFETTVKDVLALYSKITGKEL 430


>07_01_1091 -
           10015180-10015236,10015705-10015779,10015874-10016149,
           10016204-10016332,10017070-10017171,10017626-10017688,
           10017776-10017856,10018218-10018314,10019064-10019236,
           10019327-10019434,10019706-10019789,10019985-10020047,
           10020483-10020569
          Length = 464

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/83 (45%), Positives = 53/83 (63%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           G FIA VS   E+ +P +E++PG+ LLG + + F+   D +EP +D S    FIS SYDA
Sbjct: 366 GKFIAFVSAQAESENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDA 425

Query: 543 TTHFETTCLDVLKFINMVLGKNL 475
           TTHFE+T +DVL     + GK +
Sbjct: 426 TTHFESTVMDVLSIYTKITGKTV 448


>10_05_0057 - 8660321-8660422,8661022-8661050,8662286-8662676
          Length = 173

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 493 GTGEEFDFSKVKLELGEEDQ*ITERSHEKIICILLVIQ 380
           G+GEE +  K KLE+GE+    +  S + ++ +L  +Q
Sbjct: 65  GSGEEVERIKSKLEIGEDGSPTSNSSEKTVVELLRALQ 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,520,314
Number of Sequences: 37544
Number of extensions: 298580
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)