Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0348
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43781| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)                    32   0.41 
SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  

>SB_43781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/49 (61%), Positives = 41/49 (83%)
 Frame = -2

Query: 717 FIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQ 571
           ++A+VST VET DPE E+ PGL LLG I +KFVSV++ YEP+DDG++S+
Sbjct: 19  YLAIVSTTVETADPEKELEPGLKLLGKIDEKFVSVSNLYEPLDDGTESK 67


>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
          Length = 175

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -2

Query: 708 MVSTPVET--NDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTH 535
           M+  P+E    D E  ++   +     R K V     Y P       Q+FI +S DA +H
Sbjct: 83  MLDKPIEAIVYDDEGVVKGVTSQGETARAKIVLGDSSYFPDKVKKVGQVFIPKSCDALSH 142

Query: 534 FETTCLDVLKFINMVLGK 481
           F   C D+      + G+
Sbjct: 143 FNKDCQDIEDLYERITGE 160


>SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 705 VSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFET 526
           +STPV   +  +EIR  L     +    VS    Y  I++GS+      +  D   H   
Sbjct: 742 ISTPVPPEEFRNEIRKCLQKAALVNYTRVSA---YAQIEEGSKEDAPPDKRLDDIMHLAE 798

Query: 525 TCLDVLK 505
            C+D+L+
Sbjct: 799 LCIDLLQ 805


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,899,527
Number of Sequences: 59808
Number of extensions: 369007
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)