Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0348
         (724 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003563-1|AAO39567.1|  443|Drosophila melanogaster LP03430p pro...   124   9e-29
AY069697-1|AAL39842.1|  443|Drosophila melanogaster LD46767p pro...   124   9e-29
AE014134-1641|AAF52777.1|  443|Drosophila melanogaster CG4422-PA...   124   9e-29
L03209-1|AAA28567.1|  448|Drosophila melanogaster GDP dissociati...   123   3e-28

>BT003563-1|AAO39567.1|  443|Drosophila melanogaster LP03430p
           protein.
          Length = 443

 Score =  124 bits (300), Expect = 9e-29
 Identities = 57/81 (70%), Positives = 65/81 (80%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           GWF+ MVST VET +PE EI+PGL LL  I QKFV+++DY EPIDDGS+SQIFISESYDA
Sbjct: 347 GWFVGMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFISESYDA 406

Query: 543 TTHFETTCLDVLKFINMVLGK 481
           TTHFETTCLDVL       G+
Sbjct: 407 TTHFETTCLDVLNIFKRGTGE 427



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -1

Query: 505 IYKHGTGEEFDFSKVKLELGEEDQ 434
           I+K GTGE FDFSK+K ELG+E+Q
Sbjct: 420 IFKRGTGETFDFSKIKHELGDEEQ 443


>AY069697-1|AAL39842.1|  443|Drosophila melanogaster LD46767p
           protein.
          Length = 443

 Score =  124 bits (300), Expect = 9e-29
 Identities = 57/81 (70%), Positives = 65/81 (80%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           GWF+ MVST VET +PE EI+PGL LL  I QKFV+++DY EPIDDGS+SQIFISESYDA
Sbjct: 347 GWFVGMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFISESYDA 406

Query: 543 TTHFETTCLDVLKFINMVLGK 481
           TTHFETTCLDVL       G+
Sbjct: 407 TTHFETTCLDVLNIFKRGTGE 427



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -1

Query: 505 IYKHGTGEEFDFSKVKLELGEEDQ 434
           I+K GTGE FDFSK+K ELG+E+Q
Sbjct: 420 IFKRGTGETFDFSKIKHELGDEEQ 443


>AE014134-1641|AAF52777.1|  443|Drosophila melanogaster CG4422-PA
           protein.
          Length = 443

 Score =  124 bits (300), Expect = 9e-29
 Identities = 57/81 (70%), Positives = 65/81 (80%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           GWF+ MVST VET +PE EI+PGL LL  I QKFV+++DY EPIDDGS+SQIFISESYDA
Sbjct: 347 GWFVGMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFISESYDA 406

Query: 543 TTHFETTCLDVLKFINMVLGK 481
           TTHFETTCLDVL       G+
Sbjct: 407 TTHFETTCLDVLNIFKRGTGE 427



 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -1

Query: 505 IYKHGTGEEFDFSKVKLELGEEDQ 434
           I+K GTGE FDFSK+K ELG+E+Q
Sbjct: 420 IFKRGTGETFDFSKIKHELGDEEQ 443


>L03209-1|AAA28567.1|  448|Drosophila melanogaster GDP dissociation
           inhibitor protein.
          Length = 448

 Score =  123 bits (296), Expect = 3e-28
 Identities = 61/99 (61%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           GWF+ MVST VET +PE EI+PGL LL  I QKFV+++DY EPIDDGS+SQIFISESYDA
Sbjct: 348 GWFVGMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFISESYDA 407

Query: 543 TTHFETTCLDVLKFINMVLGKNL-ISLKSSWNLVKRISK 430
           TTHFETTC DVL       G+    S     + V R SK
Sbjct: 408 TTHFETTCWDVLNIFKRGTGETFDFSKDQGTSWVTRSSK 446


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,115,606
Number of Sequences: 53049
Number of extensions: 561368
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)