Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0348
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical p...   116   2e-26
Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical p...   116   2e-26
U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.      116   2e-26
U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL032655-5|CAA21723.1|  360|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10b protein.
          Length = 459

 Score =  116 bits (278), Expect = 2e-26
 Identities = 51/72 (70%), Positives = 62/72 (86%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           GW++AMVST VET +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDA
Sbjct: 363 GWYLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDA 422

Query: 543 TTHFETTCLDVL 508
           TTHFETTC DVL
Sbjct: 423 TTHFETTCKDVL 434


>Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10a protein.
          Length = 444

 Score =  116 bits (278), Expect = 2e-26
 Identities = 51/72 (70%), Positives = 62/72 (86%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           GW++AMVST VET +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDA
Sbjct: 348 GWYLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDA 407

Query: 543 TTHFETTCLDVL 508
           TTHFETTC DVL
Sbjct: 408 TTHFETTCKDVL 419


>U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.
          Length = 444

 Score =  116 bits (278), Expect = 2e-26
 Identities = 51/72 (70%), Positives = 62/72 (86%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           GW++AMVST VET +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDA
Sbjct: 348 GWYLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDA 407

Query: 543 TTHFETTCLDVL 508
           TTHFETTC DVL
Sbjct: 408 TTHFETTCKDVL 419


>U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical
           protein C25A11.2 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 371 NKQLNNKQYTYYFFMRPLSYLLILFTKFQLDFREIKFFPSTMFINFSTSRQVVSKCVVAS 550
           N + +  Q+T+Y    P  YLLI    FQ++ R++     T+F +  + R + +  ++  
Sbjct: 341 NVKSHTSQFTFYLENSPNGYLLIAGGCFQMESRQLVNLKLTLFDSGVSCRNIQTFRILHK 400

Query: 551 *DSEINI 571
             S I +
Sbjct: 401 EQSTIKV 407


>AL032655-5|CAA21723.1|  360|Caenorhabditis elegans Hypothetical
           protein Y6B3B.10 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 362 FSLNKQLNNKQYTYYFFMRPLSYLL--ILFTKFQLDFREIKFFPSTMF 499
           F L K+ N + Y YYF M   +++L  I++  F+L +   K   +T++
Sbjct: 231 FYLKKRTNRQYYKYYFLMGNAAFILFAIIWVIFRLYWYTCKLLYATIY 278


>AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK355.2a protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 233 FQNIVGWLLFLSLIFISVELVCTS*KLFICYFVTDMHSNMVH 108
           F+ ++GW   L+L     + +     L +CYF  D+ S+M+H
Sbjct: 103 FEWLIGWNTQLALFLSYTKAISL---LIVCYFYLDIASSMMH 141


>AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical
           protein ZK355.2b protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 233 FQNIVGWLLFLSLIFISVELVCTS*KLFICYFVTDMHSNMVH 108
           F+ ++GW   L+L     + +     L +CYF  D+ S+M+H
Sbjct: 113 FEWLIGWNTQLALFLSYTKAISL---LIVCYFYLDIASSMMH 151


>Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical
           protein F58G1.7 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +2

Query: 359 GFSLNKQLNNKQYTYYFF-----MRPLSYLLILFTKFQLDFREIKFFPSTMFINF 508
           GF++N  L N  + Y  +     M  L   L  +  FQL      F  +T+F+NF
Sbjct: 235 GFTVNFYLLNSSFQYQIYSPMPTMHKLRLTLTFYGVFQLFISIFIFLSATIFLNF 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,562,267
Number of Sequences: 27780
Number of extensions: 315956
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)