Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0348
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i...    92   3e-19
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i...    90   1e-18
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ...    78   7e-15
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    29   3.1  
At5g20120.1 68418.m02395 expressed protein                             27   9.5  
At5g19660.1 68418.m02339 subtilase family protein contains Pfam ...    27   9.5  
At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase fa...    27   9.5  

>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
           identical to GDP dissociation inhibitor [Arabidopsis
           thaliana] GI:1655424
          Length = 445

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/83 (48%), Positives = 58/83 (69%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           G FIA VST  ET++P++E++PG+ LLG + + F  + D YEP+++ +    FIS SYDA
Sbjct: 348 GKFIAFVSTDAETDNPQTELQPGIDLLGPVDELFFDIYDRYEPVNEPTLDNCFISTSYDA 407

Query: 543 TTHFETTCLDVLKFINMVLGKNL 475
           TTHF+TT +DVL    ++ GK L
Sbjct: 408 TTHFDTTVVDVLNMYKLITGKEL 430


>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
           identical to Rab GDP dissociation inhibitor AtGDI2
           [Arabidopsis thaliana] GI:2446981
          Length = 444

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 41/83 (49%), Positives = 55/83 (66%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           G FIA VST  ET++P++E++PG  LLG + + F  + D YEP+++      FIS SYDA
Sbjct: 348 GKFIAFVSTDAETDNPQTELKPGTDLLGPVDEIFFDMYDRYEPVNEPELDNCFISTSYDA 407

Query: 543 TTHFETTCLDVLKFINMVLGKNL 475
           TTHFETT  DVL    ++ GK L
Sbjct: 408 TTHFETTVADVLNMYTLITGKQL 430


>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
           strong similarity to GDP dissociation inhibitor protein
           OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
           PF00996: GDP dissociation inhibitor
          Length = 365

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = -2

Query: 723 GWFIAMVSTPVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDA 544
           G +IA VS   ET++PE E++PG+ LLG   + F    D Y P +   +   FIS +YDA
Sbjct: 268 GKYIAFVSAEAETDNPEEELKPGIELLGPTDEIFYHSYDTYVPTNIQEEDNCFISATYDA 327

Query: 543 TTHFETTCLDVLKFINMVLGKNL 475
           TTHFE+T +DVL     + GK L
Sbjct: 328 TTHFESTVVDVLDMYTKITGKTL 350


>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 705 VSTPVETNDPESEIRPGLALLGAIRQKFVSVT 610
           + TP E NDP   ++  L + G +++ FV  T
Sbjct: 784 IKTPFEVNDPFRLVKSALLVTGIVQENFVDST 815


>At5g20120.1 68418.m02395 expressed protein 
          Length = 188

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 155 LFICYFVTDMHSNMVHLLMQ 96
           +FI YF  D HSNM+H+L++
Sbjct: 63  VFIVYF-GDRHSNMIHILLR 81


>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
            profile: PF00082 subtilase family
          Length = 1038

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 437  ILFTKFQLDFREI----KFFPSTMF-INFSTSRQVVSKCVVAS*DSEINIW 574
            +LF+KF   +  +    K  PS    +NFST   V+ K ++   DS   +W
Sbjct: 875  VLFSKFAKRYSPVIIDEKQLPSRRTDVNFSTYSSVIGKELICESDSRFEVW 925


>At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           lysosomal phospholipase A2 [Mus musculus] GI:18699602;
           contains Pfam profile PF02450: Lecithin:cholesterol
           acyltransferase (phosphatidylcholine-sterol
           acyltransferase)
          Length = 535

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 519 DKLFQSVWWHHKIPK*IFGFGYHHRLAHNSQSLIQTFA 632
           + + + + W  +  K +FGFGY  R ++  Q  +  FA
Sbjct: 124 EMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDQFA 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,236
Number of Sequences: 28952
Number of extensions: 272546
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)