Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0347
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 60 2e-10
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 29 0.36
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 27 1.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 4.4
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 25 5.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 5.9
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 7.7
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.7
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 60.1 bits (139), Expect = 2e-10
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 246 KPFDGLKKYKYSAIDTSPLSNYVMHPSW-NFITRFIPKWIAPNLITFAGFVCMVIVILLL 422
K L YKYSAID S LS Y++ P W N + + IP +APNLIT G +VI IL +
Sbjct: 6 KQLKNLHNYKYSAIDNSLLSKYILKPYWWNQLLKVIPMSMAPNLITLIGLGFVVINILTM 65
Query: 423 TIFDYDF 443
++ Y +
Sbjct: 66 LVYKYHY 72
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 29.5 bits (63), Expect = 0.36
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 215 SMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFFRI*TLLFCIVM 36
S+ + RFL LT + +L + + FS L+ S Y NL ++ + T L C+V+
Sbjct: 116 SLSIWRFLYWLTFVLSWIILPFVQGYMESKFSTPRSRLSDSFYKNLRYYLLLTFLTCVVI 175
Query: 35 IIL 27
L
Sbjct: 176 AYL 178
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 300 LSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIFD 434
LS+ V+ P + F + F+ KW+ I GF+ ++ +++ + D
Sbjct: 353 LSSLVIAP-FVFFSTFLSKWLEDRQIMLYGFMMGIVALIVHLVLD 396
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 172 WSLVRI*RKRITTMEKLFEYKYLSQNHLTGLRNISTAPSTQARLATMLCIRVGT 333
W V R ++T + +FE K L + L+ ++ P T + CI V T
Sbjct: 1561 WKKVPNGRSKVTIPQNMFECKELVADEHGVLQEVNREPGTNSCGMVAWCITVKT 1614
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 5.9
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -3
Query: 349 INLVIKFQLGCIT*LLSGLVSMALYLYFLSPSNGFETNIYTRRVFPWSLYVSF 191
+ + FQLG I LLS LV + L L S G N + + F W+ F
Sbjct: 282 LRAIPNFQLGVIAMLLSILVLLLLPLLDFSAIRGNSFNPFGKFFF-WTFVADF 333
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 257 VKWF*DKYLYSKSFSMVVIRFLQILTRLQGQKMLVIFR 144
V W D Y Y FSM +I L+ Q Q+ L FR
Sbjct: 210 VLWCLDDYWYFSLFSMFMIIALECSVVWQRQRTLTEFR 247
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 291 TSPLSNYVMHPSWNFIT-RFIPKWIAPNL 374
TSPL +Y +N ++ +F+PKW +P L
Sbjct: 225 TSPL-DYTAKVQFNRLSGKFMPKWASPEL 252
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 1 LYESACSVNKIIITIQN 51
LYE S+ KI++T+QN
Sbjct: 677 LYERRISIGKIVLTLQN 693
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 243 SKPFDGLKKYKYSAIDTS---PLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVI 413
S P + Y Y+A + LS V+ P F++ F+ KW + GF+ ++ +
Sbjct: 331 SVPIYAKELYHYNAFQSGNFLSLSALVIAPLV-FLSTFLSKWAEDRDMMLYGFILGILAL 389
Query: 414 LLLTIFD 434
++ + D
Sbjct: 390 VVHLVLD 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,980
Number of Sequences: 5004
Number of extensions: 50549
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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