Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0347
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0145 + 1040798-1040934,1041152-1041194,1041999-1042076,104...    38   0.004
06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528...    36   0.030
12_02_0455 - 19203028-19203186,19203485-19203859,19203981-192040...    30   1.1  
02_02_0258 - 8374442-8375083                                           28   6.0  
06_01_0261 + 1926458-1926523,1926959-1927144                           27   7.9  
01_01_1013 - 8015552-8015613,8016898-8018035                           27   7.9  

>02_01_0145 +
           1040798-1040934,1041152-1041194,1041999-1042076,
           1042444-1042544,1042900-1042994,1043161-1043229,
           1043432-1043501,1043757-1043820,1043907-1043947,
           1044098-1044182,1044608-1044682
          Length = 285

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 261 LKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLIT 380
           L++YKYS +D S ++ Y++ P W+      P W   + I+
Sbjct: 12  LRRYKYSGVDHSLVAKYILQPFWSRFVNLFPLWFPDSSIS 51


>06_01_0723 -
           5287864-5287885,5287971-5288043,5288521-5288626,
           5288829-5288891,5290165-5290249,5290337-5290377,
           5291260-5291323,5291647-5291716,5291886-5291960,
           5292070-5292164,5293671-5293771,5293852-5293874,
           5293956-5294031,5294229-5294322,5294493-5294548,
           5296204-5296327,5296607-5296743
          Length = 434

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 261 LKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWI 362
           LK+Y+YS  D S ++ YV+ P W+      P W+
Sbjct: 12  LKRYRYSGQDHSVVAKYVLQPFWSRCVTLFPLWM 45


>12_02_0455 -
           19203028-19203186,19203485-19203859,19203981-19204090,
           19204200-19204243,19204435-19204635,19204937-19205079,
           19205194-19205487,19205956-19206003
          Length = 457

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
 Frame = +3

Query: 234 IFVSKPFDGLKKYKYSAIDTS---PLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMV 404
           +F S  F GL    +S +  S   P  N   +  W+ + + +P  +      +    C V
Sbjct: 281 VFGSSTFIGLGIVFFSGVCFSLFSPAFNLATNDQWHTLKQGVPHLVVYTAFFYFSISCFV 340

Query: 405 IVILLLTIFDY-DFHGAER--LRQGVDEYRIPNWALMAAAFCCF 527
           I I L  +F Y    G  +   +  ++++    WAL+A   C F
Sbjct: 341 IGIGLNILFLYRPMAGVPKSSFKAYLNDWEGRQWALLAGFLCGF 384


>02_02_0258 - 8374442-8375083
          Length = 213

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 298 GLVSMALYLYFLSPSNGFETNIYTRRVFPWS 206
           G+V++A++L F    N    +++   +FPWS
Sbjct: 40  GVVALAIFLVFWVSINAVAYSVFCGMLFPWS 70


>06_01_0261 + 1926458-1926523,1926959-1927144
          Length = 83

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/63 (20%), Positives = 27/63 (42%)
 Frame = +3

Query: 357 WIAPNLITFAGFVCMVIVILLLTIFDYDFHGAERLRQGVDEYRIPNWALMAAAFCCFWLT 536
           W+    +  A  V ++  ++ L   ++D+         +++  IP + L AA    F L+
Sbjct: 5   WLTAFFLVVALIVLVIYQLMCLADLEFDYINPFDSSSRINKVVIPEFVLQAALSVLFLLS 64

Query: 537 SRW 545
             W
Sbjct: 65  GHW 67


>01_01_1013 - 8015552-8015613,8016898-8018035
          Length = 399

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 271 YFLSPSNGFETNIYTRRVFPWSLY 200
           YF   S  F  N+YTR+V  W  +
Sbjct: 333 YFFMRSRLFGVNLYTRKVLEWQFF 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,402
Number of Sequences: 37544
Number of extensions: 283058
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)