Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0347
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_33269| Best HMM Match : Corona_3 (HMM E-Value=2.9)                  31   0.87 
SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)                 30   1.5  
SB_11713| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-13)            30   1.5  
SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)                   27   8.1  

>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 261 LKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIF 431
           L ++KYSA  T  L   +    W ++ + +P W+APN ITF G        L+L ++
Sbjct: 13  LAQHKYSAQSTEILDP-IFQVYWRWLVQQVPLWLAPNTITFLGLFINAATSLILFVY 68


>SB_33269| Best HMM Match : Corona_3 (HMM E-Value=2.9)
          Length = 279

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +3

Query: 264 KKYKYSAIDTSP----LSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIF 431
           K  K   I TSP    L   +    W  I ++ P W+   L  F      V V+++LT+ 
Sbjct: 41  KNSKEHNIKTSPKSDNLKTKIDEIIWKLIEQYFPVWLKIVLTPFKANSLAVCVVVVLTVA 100

Query: 432 DYDFHG 449
            Y F G
Sbjct: 101 IYPFWG 106


>SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)
          Length = 1329

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 327 WNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIFDYDFHG 449
           W  I ++ P W+   L  F      V V+++LT+  Y F G
Sbjct: 304 WKLIEQYFPVWLKIVLTPFKANSLAVCVVVVLTVAIYPFWG 344


>SB_11713| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-13)
          Length = 516

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 563 ACFPSIPSRCKPKTAKRRSH*RPVRYPVFVYALPKSFRAMEIVVKYSQQQNHYHHTDEAG 384
           A +PS+PS C P+T     H  P   P  +   P+SFR  +I    +   N   H  +  
Sbjct: 10  AIYPSLPSVCPPQT-----HMTPTA-PASIGGDPQSFRLQKICDTQAALDNEITHYRQVR 63

Query: 383 ERY 375
           ++Y
Sbjct: 64  KKY 66


>SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 260 PVKWF*DKYLYSKSFSMVVIRFLQILTRLQGQKML--VIFRNKN 135
           P++W   +   S+  + +V+ FL ILT L G  ++  V+ RN N
Sbjct: 11  PIEWVSTEITASERIAKIVVCFLIILTALVGNVLIIVVVCRNAN 54


>SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 240 VSKPFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILL 419
           +S  ++ L KYK  + D   L + +   +W    R     +       AGFV   +++ L
Sbjct: 5   ISLLYEQLDKYKNWSSDRKILLSLINGSAWRRNFRNSQSVVTKTWFNVAGFVQPDVIVSL 64

Query: 420 LTIFDYD 440
           L   DYD
Sbjct: 65  LNGNDYD 71


>SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)
          Length = 280

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 244 QNHLTGLRNISTAPSTQAR-LATMLCIRVGTLSLDLSQN 357
           Q  L    NI+  PS   R +  +L +R+G L  DLS+N
Sbjct: 9   QEDLCASYNIARKPSPGLRYICALLSMRIGDLGADLSKN 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,499
Number of Sequences: 59808
Number of extensions: 352752
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)