SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0347
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical ...    65   3e-11
Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical p...    63   2e-10
Z77662-16|CAJ90504.1|  424|Caenorhabditis elegans Hypothetical p...    51   7e-07
AL033512-5|CAA22073.2|  424|Caenorhabditis elegans Hypothetical ...    51   7e-07
U41544-3|AAA83185.3|  439|Caenorhabditis elegans Gex interacting...    31   0.76 
AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical ...    31   0.76 
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    28   4.1  
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z70750-5|CAA94740.1|  123|Caenorhabditis elegans Hypothetical pr...    27   7.1  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   7.1  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   7.1  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   7.1  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   7.1  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   7.1  
AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z93388-7|CAB07654.1|  141|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z92789-3|CAB07220.1|  123|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z83245-9|CAB05832.1|  122|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z83245-5|CAB05830.1|  122|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z82271-3|CAB05211.1|  123|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81495-1|CAB04061.1|  122|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z73102-9|CAA97413.1|  123|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z70783-6|CAA94856.1|  195|Caenorhabditis elegans Hypothetical pr...    27   9.4  
X15633-2|CAA33642.1|  122|Caenorhabditis elegans histone protein...    27   9.4  
U64845-7|AAC48023.1|  123|Caenorhabditis elegans Histone protein...    27   9.4  
U64843-7|AAF98225.1|  123|Caenorhabditis elegans Histone protein...    27   9.4  
U64843-6|AAF98230.1|  123|Caenorhabditis elegans Histone protein...    27   9.4  
U58750-8|AAB00648.1|  123|Caenorhabditis elegans Histone protein...    27   9.4  
U40934-8|AAK84525.1|  122|Caenorhabditis elegans Histone protein...    27   9.4  
AF047656-5|AAC05103.1|  122|Caenorhabditis elegans Histone prote...    27   9.4  
AC024696-7|AAK84513.1|  141|Caenorhabditis elegans Histone prote...    27   9.4  
AC024696-6|AAK84507.1|  141|Caenorhabditis elegans Histone prote...    27   9.4  

>AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical
           protein F54D7.2 protein.
          Length = 393

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 33/90 (36%), Positives = 46/90 (51%)
 Frame = +3

Query: 258 GLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIFDY 437
           G   YKY+ +D SPLS YV HP WN++  F P+   PN++T  G+  ++    +    DY
Sbjct: 23  GFDSYKYNCVDNSPLSVYVSHPFWNWLVVFYPRTWVPNVLTLVGWGFVMAGFFIEAYLDY 82

Query: 438 DFHGAERLRQGVDEYRIPNWALMAAAFCCF 527
                +R   G     IP+W   AAA C F
Sbjct: 83  SI---DRNSDG-STNPIPDWFWFAAAACTF 108


>Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = +3

Query: 261 LKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIFDY 437
           LK++KYSA+D S L    M   W F+    P WIAPNLIT+ G V  +I +L+L+ F Y
Sbjct: 31  LKEHKYSAVDNSWLDELCMKRWWEFVITLCPMWIAPNLITWIGLVINLITVLVLSSFSY 89


>Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = +3

Query: 261 LKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIFDY 437
           LK++KYSA+D S L    M   W F+    P WIAPNLIT+ G V  +I +L+L+ F Y
Sbjct: 31  LKEHKYSAVDNSWLDELCMKRWWEFVITLCPMWIAPNLITWIGLVINLITVLVLSSFSY 89


>Z77662-16|CAJ90504.1|  424|Caenorhabditis elegans Hypothetical
           protein Y49A3A.1 protein.
          Length = 424

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +3

Query: 261 LKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIF 431
           L ++ YSA+DTS L    M   W  +  + P W+APNL+T  G +  +  +L+L+ +
Sbjct: 61  LDEHVYSAVDTSWLDELCMKKFWEAVVLYYPLWVAPNLLTLIGLIVNLTTVLVLSFY 117


>AL033512-5|CAA22073.2|  424|Caenorhabditis elegans Hypothetical
           protein Y49A3A.1 protein.
          Length = 424

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +3

Query: 261 LKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIF 431
           L ++ YSA+DTS L    M   W  +  + P W+APNL+T  G +  +  +L+L+ +
Sbjct: 61  LDEHVYSAVDTSWLDELCMKKFWEAVVLYYPLWVAPNLLTLIGLIVNLTTVLVLSFY 117


>U41544-3|AAA83185.3|  439|Caenorhabditis elegans Gex interacting
           protein protein 15 protein.
          Length = 439

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 186 PDKTPRSKDAGNISK*KQIIIFVRHIRFEHFTLR*FNIFPNLNITILYRNDNFIYRTR 13
           P   P + D GN     +  +  RH++F HF L+ +  FP++ +++L   D F   TR
Sbjct: 199 PAPAPPANDFGNYQP--KSALSSRHLKFSHFLLQCY-FFPSVFLSLLSVTDPFPATTR 253


>AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical
           protein H20J04.7 protein.
          Length = 337

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = -2

Query: 227 SKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKL-LFSFVTFDLNTSLYANLTFFRI*TLL 51
           S S  ++++  L++L  +    M++    KN L L  F  F   T + +++  FR+  L+
Sbjct: 36  SYSIKIILLLVLEVLNVMVQSFMVIFILKKNCLKLTPFFAF---TVVRSSMIIFRVSFLI 92

Query: 50  FCIVMIILFTEHAL 9
           F I+M+ + +E +L
Sbjct: 93  FAIIMLEMTSESSL 106


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +3

Query: 261 LKKYKYSAIDTSPLS--NYVMHPSWNFITRFIPKWIAPN--LITFAGFVCMVIVILLLTI 428
           L K   S+ID    +  +Y+   S N  +   P W APN     FA   C+ +  L+++ 
Sbjct: 518 LSKLLSSSIDNEECTFPSYMCKLSMNLHSDLYPPWYAPNDVFTNFAILFCLSLTFLVISF 577

Query: 429 F 431
           F
Sbjct: 578 F 578


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 363 APNLITFAGFVCMVIVILLLTIFDYDFHG 449
           AP ++ F   +C+++VILLL +F+  F+G
Sbjct: 57  APIIVHFHRLICVMLVILLLCLFEM-FYG 84


>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
           protein AC3.5 protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 255 DGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKW 359
           +GLK+YKY   +    S +   PS++++    P +
Sbjct: 309 NGLKEYKYKNSEGKEQSMFTTQPSYSYLRHVFPSF 343


>Z70750-5|CAA94740.1|  123|Caenorhabditis elegans Hypothetical
           protein C50F4.5 protein.
          Length = 123

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 20  KPKDGKKRKHARKESYSVYIYRVLK 44


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -2

Query: 239  KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 69
            K+ Y+  + +V++RF  I +R    KML++      ++  F +F + T+L+  + F+
Sbjct: 1302 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1354


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -2

Query: 239  KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 69
            K+ Y+  + +V++RF  I +R    KML++      ++  F +F + T+L+  + F+
Sbjct: 1336 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1388


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -2

Query: 239  KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 69
            K+ Y+  + +V++RF  I +R    KML++      ++  F +F + T+L+  + F+
Sbjct: 1394 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1446


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -2

Query: 239  KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 69
            K+ Y+  + +V++RF  I +R    KML++      ++  F +F + T+L+  + F+
Sbjct: 1447 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1499


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -2

Query: 239  KYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFF 69
            K+ Y+  + +V++RF  I +R    KML++      ++  F +F + T+L+  + F+
Sbjct: 1366 KFTYTFGYLVVILRFFTIASRNSTLKMLML----TVIMSMFRSFFIITALFLLVLFY 1418


>AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical
           protein F59D6.7 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -2

Query: 227 SKSFSMVVIRFLQILTRLQGQKML---VIFRNKNKLLFSFVTFDLNTSLYANLTFFRI 63
           SKS  +   +F++IL   Q    +    +   K+KL F+F  +DLN + Y     F++
Sbjct: 98  SKSGQLTFRQFVRILAHFQPISKVKDNALNSRKDKLRFAFKMYDLNKNNYITREEFKV 155


>Z93388-7|CAB07654.1|  141|Caenorhabditis elegans Hypothetical
           protein T10C6.11 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 38  KPKDGKKRRHARKESYSVYIYRVLK 62


>Z92789-3|CAB07220.1|  123|Caenorhabditis elegans Hypothetical
           protein H02I12.6 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 20  KPKDGKKRRHARKESYSVYIYRVLK 44


>Z83245-9|CAB05832.1|  122|Caenorhabditis elegans Hypothetical
           protein ZK131.9 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 19  KPKDGKKRRHARKESYSVYIYRVLK 43


>Z83245-5|CAB05830.1|  122|Caenorhabditis elegans Hypothetical
           protein ZK131.5 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 19  KPKDGKKRRHARKESYSVYIYRVLK 43


>Z82271-3|CAB05211.1|  123|Caenorhabditis elegans Hypothetical
           protein F54E12.4 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 20  KPKDGKKRRHARKESYSVYIYRVLK 44


>Z81495-1|CAB04061.1|  122|Caenorhabditis elegans Hypothetical
           protein F08G2.1 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 19  KPKDGKKRRHARKESYSVYIYRVLK 43


>Z73102-9|CAA97413.1|  123|Caenorhabditis elegans Hypothetical
           protein B0035.8 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 20  KPKDGKKRRHARKESYSVYIYRVLK 44


>Z70783-6|CAA94856.1|  195|Caenorhabditis elegans Hypothetical
           protein ZK856.8 protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 200 RFLQILTRLQG---QKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFFRI 63
           +F++IL   Q     K   +   K+KLLF+F  +DLN + Y     F++
Sbjct: 89  QFVRILAHFQPISRVKKNALNSRKDKLLFAFKMYDLNKNDYITREEFKV 137


>X15633-2|CAA33642.1|  122|Caenorhabditis elegans histone protein
           protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 19  KPKDGKKRRHARKESYSVYIYRVLK 43


>U64845-7|AAC48023.1|  123|Caenorhabditis elegans Histone protein 8
           protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 20  KPKDGKKRRHARKESYSVYIYRVLK 44


>U64843-7|AAF98225.1|  123|Caenorhabditis elegans Histone protein 20
           protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 20  KPKDGKKRRHARKESYSVYIYRVLK 44


>U64843-6|AAF98230.1|  123|Caenorhabditis elegans Histone protein 22
           protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 20  KPKDGKKRRHARKESYSVYIYRVLK 44


>U58750-8|AAB00648.1|  123|Caenorhabditis elegans Histone protein 62
           protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 20  KPKDGKKRRHARKESYSVYIYRVLK 44


>U40934-8|AAK84525.1|  122|Caenorhabditis elegans Histone protein 29
           protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 19  KPKDGKKRRHARKESYSVYIYRVLK 43


>AF047656-5|AAC05103.1|  122|Caenorhabditis elegans Histone protein
           34 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 19  KPKDGKKRRHARKESYSVYIYRVLK 43


>AC024696-7|AAK84513.1|  141|Caenorhabditis elegans Histone protein
           54 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 38  KPKDGKKRRHARKESYSVYIYRVLK 62


>AC024696-6|AAK84507.1|  141|Caenorhabditis elegans Histone protein
           52 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 533 KPKTAKRRSH*RPVRYPVFVYALPK 459
           KPK  K+R H R   Y V++Y + K
Sbjct: 38  KPKDGKKRRHARKESYSVYIYRVLK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,817,748
Number of Sequences: 27780
Number of extensions: 270025
Number of successful extensions: 671
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -