Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0345
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    28   0.067
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.47 
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           25   0.63 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.8  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    22   5.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.7  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 HSSRDFTIQEVISSTFAHFSQGSSY 269
           H+  DFT+Q +++     F QG+SY
Sbjct: 69  HNCLDFTVQNILTFLSCRFHQGASY 93


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 342 QQKTENLKTCFLNLKQSFPTVESANNLSLVKNAQKLMR 229
           +Q+T++L   F +L++S PT+ S + LS ++  +   R
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQTLKLAAR 142


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 342 QQKTENLKTCFLNLKQSFPTVES 274
           +Q+T++L   F +L++S PT+ S
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS 28


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +3

Query: 102 QSVLGRAVWQGESLRMNLISDSAMFAGV-----GVEHSSRDFTIQEV 227
           + +L   V  G S++    SDSA+F  V     G + +S +  +QEV
Sbjct: 849 EEILANGVLSGLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEV 895


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 533 CDKSAQLKAVSARCCRACV 477
           C  + +L+ V   CC  CV
Sbjct: 715 CPDNMKLEKVPGECCAICV 733


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 103 NLSWAERCGKESL 141
           NL + ERC KESL
Sbjct: 44  NLKYLERCIKESL 56


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 431 TVPINSSTLCATRTETG 381
           T+ INS T+C T +  G
Sbjct: 146 TMEINSDTMCVTFSNLG 162


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 59  VMALVLTERSLTVQSIC 109
           ++ALV+ E + TV +IC
Sbjct: 199 LVALVVNENNTTVNNIC 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,778
Number of Sequences: 336
Number of extensions: 3298
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)